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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_6241_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31124.4 Da PI: 10.1503 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_6241_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 336 | 9.9e-103 | 1 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........mafl 61
mdddg rn+ yyep+++ + lglqlm +++rd+k+ re+ + +++ ++++++rd m++
cra_locus_6241_iso_1_len_1272_ver_3 1 MDDDGL--RNWVYYEPTTTTTRGLGLQLMPAMTDRDTKPflsgRESSV-MAAGNGVFHPRDyaasgvpdhMDY- 70
999999..9********99999********************999999.************999999999999. PP
GAGA_bind 62 qrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekleal 135
r++++++ ++++l++ + ++ + +vl +t+ +++q+ +++++ +++ +
cra_locus_6241_iso_1_len_1272_ver_3 71 VRETWINH--------RDRFLQMFPGNH--------YNSVLAETSGSHQMQM-----VQQQPDTTTD----TRV 119
88999998........678999999666........4678889999999988.....2222222222....223 PP
GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlP 209
+e+ ++ + kk+ + a+ pk +kakk kk+ +++k++ +++ +r+ka kk++d+v+ng++lD+s++P
cra_locus_6241_iso_1_len_1272_ver_3 120 AVEDPSVRKEAGPAKKRAAAAAGPKPPKAKKSKKSAAVPKENGSSSV--QRTKAAKKNMDVVINGIDLDISGIP 191
33333333344444455566788999999999998888877777777..79*********************** PP
GAGA_bind 210 vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+
cra_locus_6241_iso_1_len_1272_ver_3 192 IPVCSCTGTPQQCYRWGCGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 265
************************************************************************** PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DL++hWAkHGtnkfvtir
cra_locus_6241_iso_1_len_1272_ver_3 266 DLRTHWAKHGTNKFVTIR 283
*****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDDGLRNWV YYEPTTTTTR GLGLQLMPAM TDRDTKPFLS GRESSVMAAG NGVFHPRDYA 60
ASGVPDHMDY VRETWINHRD RFLQMFPGNH YNSVLAETSG SHQMQMVQQQ PDTTTDTRVA 120
VEDPSVRKEA GPAKKRAAAA AGPKPPKAKK SKKSAAVPKE NGSSSVQRTK AAKKNMDVVI 180
NGIDLDISGI PIPVCSCTGT PQQCYRWGCG GWQSACCTTT ISMYPLPMST KRRGARIAGR 240
KMSQGAFKKV LEKLAAEGYN FANPIDLRTH WAKHGTNKFV TIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
