PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_62361_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 140aa MW: 16449.8 Da PI: 9.0675 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.3 | 3.2e-31 | 1 | 50 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++gklye++s cra_locus_62361_iso_1_len_420_ver_3 1 RIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALVIFSNRGKLYEFCS 50 7***********************************************96 PP | |||||||
2 | K-box | 74.7 | 2.6e-25 | 69 | 140 | 4 | 75 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 + ++ + +++s+++e+ kLk+++e+Lq+ qRhllG++L++L++ +L++Le qL++slk+iRs++++l+l+ cra_locus_62361_iso_1_len_420_ver_3 69 LEVNRSIKDNEQSSYREYLKLKAKYESLQQYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQLMLD 140 56666677889***********************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 9.1E-27 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-37 | 1 | 69 | No hit | No description |
PROSITE profile | PS50066 | 28.385 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-30 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-30 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 14 | 29 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-19 | 29 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.3E-20 | 76 | 140 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.977 | 79 | 140 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
RIENKINRQV TFAKRRNGLL KKAYELSVLC DAEVALVIFS NRGKLYEFCS SNNMLKTLDR 60 YQKCSYGTLE VNRSIKDNEQ SSYREYLKLK AKYESLQQYQ RHLLGDELGP LTIDDLEHLE 120 VQLDTSLKHI RSTRTQLMLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-19 | 66 | 140 | 1 | 78 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-19 | 66 | 140 | 1 | 78 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-19 | 66 | 140 | 1 | 78 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-19 | 66 | 140 | 1 | 78 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233911.1 | 7e-96 | developmental protein SEPALLATA 1-like | ||||
Refseq | XP_006338336.1 | 8e-96 | PREDICTED: developmental protein SEPALLATA 1 isoform X2 | ||||
Refseq | XP_010315869.1 | 7e-96 | MADS-box protein isoform X1 | ||||
Refseq | XP_015064043.1 | 6e-96 | developmental protein SEPALLATA 1-like isoform X1 | ||||
Refseq | XP_015064044.1 | 6e-96 | developmental protein SEPALLATA 1-like isoform X2 | ||||
Refseq | XP_015162103.1 | 8e-96 | PREDICTED: developmental protein SEPALLATA 1 isoform X1 | ||||
Swissprot | Q8LLR2 | 3e-76 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | Q8VXG0 | 1e-94 | Q8VXG0_SOLLC; MADS-box protein | ||||
STRING | Solyc02g089200.2.1 | 2e-95 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400003483 | 3e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Publications ? help Back to Top | |||
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