PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_62127_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 94aa MW: 10799.2 Da PI: 5.7652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.7 | 3.6e-19 | 1 | 33 | 19 | 51 |
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeyss 51 g++KKAeELSvLCda+va+iifss+gkl+eyss cra_locus_62127_iso_1_len_282_ver_3 1 GLFKKAEELSVLCDADVALIIFSSNGKLFEYSS 33 8******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-8 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-19 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-15 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.619 | 1 | 35 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
GLFKKAEELS VLCDADVALI IFSSNGKLFE YSSSSMKEIL ERRDLHSKNL EKLDQPSLEL 60 QLVENSNYSR LSKEISEKSH RLRQMRGEEL QGLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549600.1 | 6e-59 | PREDICTED: MADS-box protein JOINTLESS isoform X2 | ||||
Swissprot | Q9FUY6 | 5e-58 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A1U8F1S7 | 1e-57 | A0A1U8F1S7_CAPAN; MADS-box protein JOINTLESS isoform X2 | ||||
STRING | Solyc11g010570.1.1 | 2e-56 | (Solanum lycopersicum) | ||||
STRING | XP_009783886.1 | 2e-56 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Publications ? help Back to Top | |||
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