PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6180_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 29053.1 Da PI: 9.5674 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.2 | 5.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss cra_locus_6180_iso_5_len_1040_ver_3 9 KRIENKISRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 100.3 | 2.8e-33 | 87 | 177 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++ + +++ ++ kL ++ie Lqr++Rh++GedL++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+++elqkk cra_locus_6180_iso_5_len_1040_ver_3 87 QSEPQDNWSVQYPKLVSKIELLQRNIRHYMGEDLDPLNLRELQSLEQQLDTSLKRIRTRKNQLMQESVSELQKK 160 4556789******************************************************************* PP K-box 84 ekelqeenkaLrkklee 100 ek+lqe+n++L kkl+e cra_locus_6180_iso_5_len_1040_ver_3 161 EKALQEQNNSLAKKLKE 177 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.46E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-32 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-28 | 88 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.11 | 91 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRGRVELKR IENKISRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYSST 60 DSSMESILER YERYSHAEKR LTALHDQSEP QDNWSVQYPK LVSKIELLQR NIRHYMGEDL 120 DPLNLRELQS LEQQLDTSLK RIRTRKNQLM QESVSELQKK EKALQEQNNS LAKKLKESEK 180 VDSDQQTQLV QRRLVQSSTA MLLPDPPPHS SLQLPSLTIG GPFLATGGGM DEGGGGAQDR 240 HGSKSLVPPW LLPHIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 8e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 8e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 8e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 8e-22 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608614.1 | 1e-118 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4 | ||||
Refseq | XP_016466964.1 | 1e-118 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Swissprot | D7SMN6 | 1e-101 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1S3ZRN0 | 1e-117 | A0A1S3ZRN0_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
STRING | XP_009608611.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
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