PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6180_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28323.4 Da    PI: 9.7443
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6180_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.9e-29959151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  cra_locus_6180_iso_1_len_1022_ver_3  9 KRIENKISRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                                         79***********************************************96 PP
2K-box96.64e-328517114100
                                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                          + +++ ++ kL ++ie Lqr++Rh++GedL++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+++elqkkek+l
  cra_locus_6180_iso_1_len_1022_ver_3  85 HDQSEPQYPKLVSKIELLQRNIRHYMGEDLDPLNLRELQSLEQQLDTSLKRIRTRKNQLMQESVSELQKKEKAL 158
                                          556778899***************************************************************** PP

                                K-box  88 qeenkaLrkklee 100
                                          qe+n++L kkl+e
  cra_locus_6180_iso_1_len_1022_ver_3 159 QEQNNSLAKKLKE 171
                                          **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002652.37E-41277No hitNo description
SuperFamilySSF554554.06E-32283IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.60185175IPR002487Transcription factor, K-box
PfamPF014861.6E-2687169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYSST  60
DSSMESILER YERYSHAEKR LTALHDQSEP QYPKLVSKIE LLQRNIRHYM GEDLDPLNLR  120
ELQSLEQQLD TSLKRIRTRK NQLMQESVSE LQKKEKALQE QNNSLAKKLK ESEKVDSDQQ  180
TQLVQRRLVQ SSTAMLLPDP PPHSSLQLPS LTIGGPFLAT GGGMDEGGGG AQDRHGSKSL  240
VPPWLLPHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-22175173MEF2 CHIMERA
6byy_B6e-22175173MEF2 CHIMERA
6byy_C6e-22175173MEF2 CHIMERA
6byy_D6e-22175173MEF2 CHIMERA
6bz1_A6e-22175173MEF2 CHIMERA
6bz1_B6e-22175173MEF2 CHIMERA
6bz1_C6e-22175173MEF2 CHIMERA
6bz1_D6e-22175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608614.11e-113PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4
RefseqXP_016466964.11e-113PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN63e-96FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLM4IT411e-114M4IT41_CORKO; Fruitful 1
STRINGXP_009608611.11e-110(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]