PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6134_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 703aa    MW: 76866.9 Da    PI: 5.9218
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6134_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.1e-29207260155
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  cra_locus_6134_iso_2_len_2348_ver_3 207 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 260
                                          79*******************.********************************8 PP
2Response_reg81.33.2e-27261341109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl vdD+p+ ++ll+ +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+ +  e  +l
  cra_locus_6134_iso_2_len_2348_ver_3  26 VLAVDDDPICLKLLEGLLRKCQY-QVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELLGLEM-DL 97 
                                          799********************.***************999889*********************96644.8* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p+i+++a+++ +++ + +  Ga d+l+Kp+ +eel++
  cra_locus_6134_iso_2_len_2348_ver_3  98 PVIMLSANSDTKLVMKGVTHGACDYLVKPVRIEELRN 134
                                          ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.9E-1676702IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.8E-4323157No hitNo description
SuperFamilySSF521723.27E-3623148IPR011006CheY-like superfamily
SMARTSM004484.8E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.63225140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2426135IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.27E-2927140No hitNo description
Gene3DG3DSA:1.10.10.604.7E-30204265IPR009057Homeodomain-like
PROSITE profilePS5129411.867204263IPR017930Myb domain
SuperFamilySSF466892.51E-19205264IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24207260IPR006447Myb domain, plants
PfamPF002495.2E-6209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MTVEEIRRNL EGEDRNYDNF PVGMRVLAVD DDPICLKLLE GLLRKCQYQV TTTSQARMAL  60
KMLRENRDRF DLVISDVHMP DMDGFKLLEL LGLEMDLPVI MLSANSDTKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKFDSKTQ SKSDDQDKGH GRSDDGQGNV QMGIGDQNGK  180
VNKKRKDDDD DGEENSNEHD DPSSQKKPRV VWSIELHRKF VAAVNQLGIE KAVPKRILDL  240
MNVEGLTREN VASHLQKYRL YLKRISSVAS QQANMVAALG GKESAYLRMS QLDGLGDFRT  300
LAGSGRLGNP AFASYPQSGI LGRLNSPAGI GVRSLASSAL MQPSHVQNLS NPISTLGKLH  360
SAISPASQNT SLFQGVPSSL ELDQLQQNKS IARVGDFNPL DDSRVFNPAN AFTDSRNTVM  420
NSNNTSTGTP SNMSILQGNP QQAGAAAGFL NQSSISLSSF NSEPSTIDVG ASSNFMDHGR  480
CNENWQSAVQ LTKFPANCLQ PTESFSQGQL PLTGVRDNNS SAGPHLQNSP LEFSSMAAVS  540
ANLEDSRGGM RSQEGMVGGI VQNINQAPQQ MWAEPRPMYS ENPNNVLSTM NSHISANGNG  600
NPLIQSMGEN GMSDRRMNMC LTGHSSAGNA FLQQAEIERS STGSRMRSSE DYILEQTKAQ  660
GGLAPHGYDN WDDLMGSVIK REQDGNVFDG DVGFDAYPFG SCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-26203266164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070314.10.0two-component response regulator ARR12-like
RefseqXP_027070315.10.0two-component response regulator ARR12-like
TrEMBLA0A068UNX60.0A0A068UNX6_COFCA; Two-component response regulator
STRINGXP_009599949.10.0(Nicotiana tomentosiformis)