PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_61247_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 170aa MW: 17890.6 Da PI: 9.8418 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47 | 4.2e-15 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV cra_locus_61247_iso_1_len_721_ver_3 6 CGGCRTLLMHPRGATSVRCSCCHTV 30 ************************9 PP | |||||||
2 | zf-LSD1 | 39.2 | 1.2e-12 | 44 | 67 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ cra_locus_61247_iso_1_len_721_ver_3 44 CGNCRMMLMYPCGAPSVKCAVCHY 67 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.0E-17 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-13 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-11 | 41 | 70 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-12 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAQLICGGCR TLLMHPRGAT SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV 60 KCAVCHYITN VNAGDGRTHV PVNTPNGTAT PASGSSSTAK ARSQNQTVVV QNPMSVDESG 120 KLVNNVVVGV TTTSSLSVKL VHGRRLRVFP ASIGKMSIKM AAAYKYGSVX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065909.1 | 7e-89 | protein LSD1 | ||||
Refseq | XP_015065910.1 | 7e-89 | protein LSD1 | ||||
Refseq | XP_015065911.1 | 7e-89 | protein LSD1 | ||||
Swissprot | Q6ASS2 | 4e-46 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | M1BWM1 | 3e-86 | M1BWM1_SOLTU; LSD1-like protein | ||||
STRING | PGSC0003DMT400054616 | 4e-87 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Publications ? help Back to Top | |||
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