PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_60572_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14192.6 Da PI: 4.2171 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 47.2 | 3.8e-15 | 19 | 125 | 1 | 105 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn 73 lv+ Ll++Ae v ++++ a+al++r + +as g+++qR+++yf+eAL++r+ ++ ++ + ++ + + +++ cra_locus_60572_iso_1_len_374_ver_3 19 LVQHLLAAAELVGQEQFDIASALITRCQWIASDIGNAVQRIVFYFAEALQQRIEIeTGRTTLDRIQEQVAYQMK 92 6899*************************************************986888899999888888888 PP GRAS 74 sseelaalkl.fsevsPilkfshltaNqaIlea 105 + +++ l + v P+ ++ +l+a + I+e+ cra_locus_60572_iso_1_len_374_ver_3 93 LQVDFHVSFLeCHRVIPFSQVLQLAAVESIVES 125 66666655555899****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.859 | 1 | 126 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-12 | 19 | 125 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
XYSSALSNLS IEETADVELV QHLLAAAELV GQEQFDIASA LITRCQWIAS DIGNAVQRIV 60 FYFAEALQQR IEIETGRTTL DRIQEQVAYQ MKLQVDFHVS FLECHRVIPF SQVLQLAAVE 120 SIVESX |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027172080.1 | 1e-44 | DELLA protein RGL1-like | ||||
TrEMBL | M1AI73 | 3e-36 | M1AI73_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1AI74 | 3e-37 | M1AI74_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023345 | 4e-37 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400023346 | 5e-38 | (Solanum tuberosum) |