PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6050_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 257aa    MW: 28745.1 Da    PI: 7.6703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6050_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2076125255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  cra_locus_6050_iso_1_len_1144_ver_3  76 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 125
                                          7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3375134IPR001471AP2/ERF domain
CDDcd000181.05E-2076134No hitNo description
SuperFamilySSF541713.2E-2276134IPR016177DNA-binding domain
SMARTSM003802.7E-3876139IPR001471AP2/ERF domain
PfamPF008472.5E-1476125IPR001471AP2/ERF domain
PROSITE profilePS5103224.97476133IPR001471AP2/ERF domain
PRINTSPR003671.2E-117788IPR001471AP2/ERF domain
PRINTSPR003671.2E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTAMVSALSQ VIGSSSSSSS SRGSTNINNH HHQQVSELIG APPHEYQSTP AHVLEIQSQQ  60
PLQEQGNYNN NQRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAALAYDEAA  120
LRFKGNKAKL NFPERVQSLS SKTTPHFISY LPPNPPHHHH HQLPSHHNYP YNNNVFSSAA  180
GGGTFVSSHD ELSANSSSSF SMPISDHHQQ QEQGGQQFHQ GFSFNPIYNN IETSNSTSSD  240
PNSESWEEFD NSYGRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2775136163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022017737.16e-48ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH549e-44EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A343CX961e-128A0A343CX96_CATRO; AP2/ERF20673
STRINGXP_008356833.17e-46(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]