PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6008_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 289aa    MW: 33148.7 Da    PI: 8.8489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6008_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19101151155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++++GVr+++ +g+W+AeIrdp     r  r++lg++ taeeAa  +++a+ k++g
  cra_locus_6008_iso_2_len_1037_ver_3 101 KKFRGVRQRP-WGKWAAEIRDP---A-RkSRIWLGTYETAEEAAMVYDRAAIKIRG 151
                                          59********.**********8...2.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-34101158No hitNo description
Gene3DG3DSA:3.30.730.101.1E-30102158IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22102158IPR016177DNA-binding domain
PfamPF008476.6E-13102151IPR001471AP2/ERF domain
PROSITE profilePS5103223.288102159IPR001471AP2/ERF domain
SMARTSM003801.5E-37102165IPR001471AP2/ERF domain
PRINTSPR003671.5E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.5E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
XIKKKKKNNK IQEMNRERKV SEPIKKKLVS NSNFKLPRII RIHVTDCDAT DSSSDEENPN  60
PNQNPGTNSR RRRRRIKKHV NEIRIEEKKR QISCPVSGNA KKFRGVRQRP WGKWAAEIRD  120
PARKSRIWLG TYETAEEAAM VYDRAAIKIR GPNALTNFLK PPDRVVLTSS ISGGYDSGKD  180
SASAESSLLC SPTSVLRFNN GGKLGEENKF KWRPLDDGKS QNNSFWNDDG LPLDQCFLNE  240
YFDFRSPSPL IYEDQEQEHQ VLEEEEGYFD DNIIGGDDDD NLDLGLSNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22101158159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974RRRRRR
26977RRRRRRIKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897307.16e-71pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2Z7BUG84e-68A0A2Z7BUG8_9LAMI; Uncharacterized protein
STRINGMigut.B01832.1.p2e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126