PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_59851_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 137aa MW: 15718.4 Da PI: 8.4927 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 133.8 | 5.4e-42 | 58 | 136 | 1 | 76 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71 ql++fw++q ie ++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkr cra_locus_59851_iso_2_len_407_ver_3 58 QLQNFWANQyqeIELVNDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRAWNHTEENKR 131 89******9989999*********************************************************** PP NF-YC 72 rtlkk 76 rtl+k cra_locus_59851_iso_2_len_407_ver_3 132 RTLQK 136 ****9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.11E-27 | 47 | 136 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.0E-34 | 74 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.0E-20 | 80 | 136 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
XPMLYGAPYH ANQMAGPSLP VSTGAQTVGL PASSGQMAQH QLAYQHIHQQ QQQQLQQQLQ 60 NFWANQYQEI ELVNDFKNHS LPLARIKKIM KADEDVRMIS AEAPIVFARA CEMFILELTL 120 RAWNHTEENK RRTLQKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-43 | 65 | 136 | 2 | 73 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364716.1 | 6e-79 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_006364717.1 | 6e-79 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 7e-46 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | M0ZUW6 | 1e-77 | M0ZUW6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400008660 | 2e-78 | (Solanum tuberosum) |