PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_59481_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 151aa    MW: 17217.4 Da    PI: 10.218
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_59481_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.3e-272070151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krien++ rqvtfskRr g++KK +ELSvLCda++ +++fss+gkl ey++
  cra_locus_59481_iso_1_len_450_ver_3 20 KRIENNTSRQVTFSKRRGGLMKKTHELSVLCDAQIGLMVFSSKGKLTEYCT 70
                                         79***********************************************96 PP

2K-box30.61.4e-111001501060
                                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLek 60 
                                          +  ++ +  +el+k+kke+ nLq ++ +++GedL++  ++eL +Le++Le+
  cra_locus_59481_iso_1_len_450_ver_3 100 SVPNNDQVFRELSKMKKETLNLQLSLQRYKGEDLSTVRFEELSELEKKLEQ 150
                                          4556677889***************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.8521272IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-381271IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-311387IPR002100Transcription factor, MADS-box
CDDcd002651.36E-401387No hitNo description
PRINTSPR004041.6E-281434IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
PfamPF003191.3E-232168IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-283449IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-284970IPR002100Transcription factor, MADS-box
PfamPF014864.5E-9103150IPR002487Transcription factor, K-box
PROSITE profilePS512978.606104151IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
XAGGQIVQLR KMGRGKIEVK RIENNTSRQV TFSKRRGGLM KKTHELSVLC DAQIGLMVFS  60
SKGKLTEYCT PPLCMNQIID RYVKTKGILP ETENRAGSSS VPNNDQVFRE LSKMKKETLN  120
LQLSLQRYKG EDLSTVRFEE LSELEKKLEQ X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-181282169MEF2C
5f28_B6e-181282169MEF2C
5f28_C6e-181282169MEF2C
5f28_D6e-181282169MEF2C
6byy_A6e-181283170MEF2 CHIMERA
6byy_B6e-181283170MEF2 CHIMERA
6byy_C6e-181283170MEF2 CHIMERA
6byy_D6e-181283170MEF2 CHIMERA
6bz1_A6e-181282169MEF2 CHIMERA
6bz1_B6e-181282169MEF2 CHIMERA
6bz1_C6e-181282169MEF2 CHIMERA
6bz1_D6e-181282169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.13e-76PREDICTED: MADS-box protein defh21
SwissprotQ8RVL41e-73DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A2G9GAS39e-75A0A2G9GAS3_9LAMI; MADS box transcription factor
STRINGMigut.C01064.1.p1e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625