PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_59481_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 151aa MW: 17217.4 Da PI: 10.218 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84 | 9.3e-27 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g++KK +ELSvLCda++ +++fss+gkl ey++ cra_locus_59481_iso_1_len_450_ver_3 20 KRIENNTSRQVTFSKRRGGLMKKTHELSVLCDAQIGLMVFSSKGKLTEYCT 70 79***********************************************96 PP | |||||||
2 | K-box | 30.6 | 1.4e-11 | 100 | 150 | 10 | 60 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLek 60 + ++ + +el+k+kke+ nLq ++ +++GedL++ ++eL +Le++Le+ cra_locus_59481_iso_1_len_450_ver_3 100 SVPNNDQVFRELSKMKKETLNLQLSLQRYKGEDLSTVRFEELSELEKKLEQ 150 4556677889***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.852 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-38 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-31 | 13 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-40 | 13 | 87 | No hit | No description |
PRINTS | PR00404 | 1.6E-28 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-23 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-9 | 103 | 150 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.606 | 104 | 151 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
XAGGQIVQLR KMGRGKIEVK RIENNTSRQV TFSKRRGGLM KKTHELSVLC DAQIGLMVFS 60 SKGKLTEYCT PPLCMNQIID RYVKTKGILP ETENRAGSSS VPNNDQVFRE LSKMKKETLN 120 LQLSLQRYKG EDLSTVRFEE LSELEKKLEQ X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-18 | 12 | 82 | 1 | 69 | MEF2C |
5f28_B | 6e-18 | 12 | 82 | 1 | 69 | MEF2C |
5f28_C | 6e-18 | 12 | 82 | 1 | 69 | MEF2C |
5f28_D | 6e-18 | 12 | 82 | 1 | 69 | MEF2C |
6byy_A | 6e-18 | 12 | 83 | 1 | 70 | MEF2 CHIMERA |
6byy_B | 6e-18 | 12 | 83 | 1 | 70 | MEF2 CHIMERA |
6byy_C | 6e-18 | 12 | 83 | 1 | 70 | MEF2 CHIMERA |
6byy_D | 6e-18 | 12 | 83 | 1 | 70 | MEF2 CHIMERA |
6bz1_A | 6e-18 | 12 | 82 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 6e-18 | 12 | 82 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 6e-18 | 12 | 82 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 6e-18 | 12 | 82 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843283.1 | 3e-76 | PREDICTED: MADS-box protein defh21 | ||||
Swissprot | Q8RVL4 | 1e-73 | DEF21_ANTMA; MADS-box protein defh21 | ||||
TrEMBL | A0A2G9GAS3 | 9e-75 | A0A2G9GAS3_9LAMI; MADS box transcription factor | ||||
STRING | Migut.C01064.1.p | 1e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |