PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5936_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 588aa MW: 64277.9 Da PI: 7.0416

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5936_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.5e-11	422	480	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe kv++L++e ++L +l l+ +a l+s++ cra_locus_5936_iso_6_len_2669_ver_3 422 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQN 480 9****************************************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-18	418	482	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	420	483	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.9E-10	422	480	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-9	422	479	No hit	No description
SuperFamily	SSF57959	6.12E-11	422	473	No hit	No description
CDD	cd14703	9.14E-24	423	474	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MGGDADEASS DMMQRLQSSF GTSSSSVPKQ PPMSMNQLDL SQLNSSQFRG QMRHFSPNFS 60 SESAKRVGIP PSHPQMPPIS PYSQIPVSRP VNQQMGMQNF GATPGPGPSH SRSLSQPSFF 120 SLDSLPPLSP SPYRESPSNS INEPVSTDVS MEDQNAGSQS LLPPSPFTRG HSSRAGESLP 180 PRKAHRRSNS DIPFGFSTIM QSSQPLMPLR SPGAPVSARE NSAAKPAQLV KRESCWEKGT 240 ETSAEGMGER KSEGEVVDDL FSAYMNLDNI DVLNSSGTDE KQGTDNREDL DSRASGTKTN 300 GGDSSDNEAT SSVNESGNSM QRSSEKREGI KRNAVGDIAP TSRHYRSVSM DSFMGKLNFG 360 EESPKLPPSP GTRPGQLSPT NSLDTNSNTF SLEFGNGEFS GAELKKIMAN EKLAEIALSD 420 PKRAKRILAN RQSAARSKER KMRYIAELEH KVQTLQTEAT TLSAQLTLLQ RDSAGLTSQN 480 NELKFRLQAM EQQAQLRDAL NEALTAEVQR LKLATTELNG DAAKFQQLSM NPQMFQLRQQ 540 QAAQLNMHQL QQQQHQQSQQ SQPSQQPQQQ QQQQQTGNAA APKNEPNQ

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MGGDADEASS DMMQRLQSSF GTSSSSVPKQ PPMSMNQLDL SQLNSSQFRG QMRHFSPNFS  60
SESAKRVGIP PSHPQMPPIS PYSQIPVSRP VNQQMGMQNF GATPGPGPSH SRSLSQPSFF  120
SLDSLPPLSP SPYRESPSNS INEPVSTDVS MEDQNAGSQS LLPPSPFTRG HSSRAGESLP  180
PRKAHRRSNS DIPFGFSTIM QSSQPLMPLR SPGAPVSARE NSAAKPAQLV KRESCWEKGT  240
ETSAEGMGER KSEGEVVDDL FSAYMNLDNI DVLNSSGTDE KQGTDNREDL DSRASGTKTN  300
GGDSSDNEAT SSVNESGNSM QRSSEKREGI KRNAVGDIAP TSRHYRSVSM DSFMGKLNFG  360
EESPKLPPSP GTRPGQLSPT NSLDTNSNTF SLEFGNGEFS GAELKKIMAN EKLAEIALSD  420
PKRAKRILAN RQSAARSKER KMRYIAELEH KVQTLQTEAT TLSAQLTLLQ RDSAGLTSQN  480
NELKFRLQAM EQQAQLRDAL NEALTAEVQR LKLATTELNG DAAKFQQLSM NPQMFQLRQQ  540
QAAQLNMHQL QQQQHQQSQQ SQPSQQPQQQ QQQQQTGNAA APKNEPNQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027162353.1	0.0	myb-like protein Z
Refseq	XP_027162354.1	0.0	myb-like protein Z
TrEMBL	A0A068TM07	0.0	A0A068TM07_COFCA; Uncharacterized protein
STRING	XP_009804619.1	0.0	(Nicotiana sylvestris)