PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_59289_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29848 Da    PI: 8.389
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_59289_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.47e-27243950
                                         HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                         rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  cra_locus_59289_iso_1_len_814_ver_3  2 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 43
                                         9****************************************8 PP
2K-box107.22e-35601592100
                                K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                                          ++ss+ s +e++++++qqe++kL+++i+nLq+ +R++lGe+L+ L+l+eL++Le+++ek+++kiRskKnell++
  cra_locus_59289_iso_1_len_814_ver_3  60 DSSSNGSISESNTQYYQQEASKLRAQISNLQNHNRNMLGESLGALTLRELKNLETKVEKGISKIRSKKNELLFA 133
                                          45666679****************************************************************** PP

                                K-box  76 qieelqkk.ekelqeenkaLrkklee 100
                                          +ie++qk+ e +l+++n++Lr+k++e
  cra_locus_59289_iso_1_len_814_ver_3 134 EIEYMQKRqEIDLHHNNQYLRAKIAE 159
                                          *****9984679***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-22145IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.231146IPR002100Transcription factor, MADS-box
CDDcd002651.78E-33256No hitNo description
SuperFamilySSF554551.44E-25261IPR002100Transcription factor, MADS-box
PfamPF003196.2E-23242IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-19823IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-192344IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2569157IPR002487Transcription factor, K-box
PROSITE profilePS5129714.63572163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
XRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY EYANSSVKET IERYKKASSD  60
SSSNGSISES NTQYYQQEAS KLRAQISNLQ NHNRNMLGES LGALTLRELK NLETKVEKGI  120
SKIRSKKNEL LFAEIEYMQK RQEIDLHHNN QYLRAKIAES ERSQQQNMNL MPGSSGYDLV  180
QAQPPFDARN YLQVNGLNPD NDYPRQDQPP LQLVXYNNYR ARASSVIPFN AANLSETSLS  240
IGDDDLKQMD MIYDCSLLYV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-162701787Myocyte-specific enhancer factor 2B
1tqe_Q3e-162701787Myocyte-specific enhancer factor 2B
1tqe_R3e-162701787Myocyte-specific enhancer factor 2B
1tqe_S3e-162701787Myocyte-specific enhancer factor 2B
6c9l_A3e-162701787Myocyte-specific enhancer factor 2B
6c9l_B3e-162701787Myocyte-specific enhancer factor 2B
6c9l_C3e-162701787Myocyte-specific enhancer factor 2B
6c9l_D3e-162701787Myocyte-specific enhancer factor 2B
6c9l_E3e-162701787Myocyte-specific enhancer factor 2B
6c9l_F3e-162701787Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102153.11e-133floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408851e-126AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0R6FU881e-135A0A0R6FU88_CATSE; AGAMOUS-like protein
STRINGMigut.M00986.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]