PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_59195_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 17399.1 Da PI: 10.0748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 61 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++ +++++g cra_locus_59195_iso_1_len_442_ver_3 61 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDIEARRIRG 110 6********.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 61 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 61 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-37 | 61 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.61E-30 | 61 | 119 | No hit | No description |
PROSITE profile | PS51032 | 23.788 | 61 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 62 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-11 | 62 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
HSKQPLRSKF IDLDDEFEAD FQDFKDYSDD DEVKPFDFKS VKSVDSNCEA DKSSKRKRKN 60 QYRGIRQRPW GKWAAEIRDP RKGIRVWLGT FNSAEEAARA YDIEARRIRG KKAKMNFPDE 120 APASASRRVV KLNHQEARRE ERSNTVEX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-22 | 60 | 120 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305599.1 | 2e-82 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q6K7E6 | 1e-41 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M1A1E2 | 5e-81 | M1A1E2_SOLTU; Ethylene responsive factor 1 | ||||
STRING | PGSC0003DMT400012547 | 9e-82 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |