PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5886_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 360aa MW: 39963.1 Da PI: 7.8389

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5886_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.9e-32	203	258	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGG + AtPk+i+elm+v+gLt+++vkSHLQkYRl+ cra_locus_5886_iso_3_len_1369_ver_3 203 KQRRCWSPELHRRFVDALQKLGGCQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 258 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.294	200	260	IPR017930	Myb domain
SuperFamily	SSF46689	2.82E-18	200	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-29	201	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-27	203	258	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	205	256	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
XEMRKIEALL LSDAILALKE ESDRYRKSNA EPVLEEFIPL KKSSDEDETD KGEIRKEDCK 60 DKMNWMSSVQ LWNSDHQSTK LDDNSSKQIP KPDSKKRLSE EENHGTSEDF FKSRKSHSTV 120 KAFAPFKGCS GLPLILPGKE DNEELPGVPG LSLKNLGIKK PREDFSCVGF SSTAGGSRAV 180 SSITSVQSNV RALSHSQSQT ARKQRRCWSP ELHRRFVDAL QKLGGCQAAT PKQIRELMQV 240 DGLTNDEVKS HLQKYRLHTR RLPTTRSSTA NQSVVVLGGL WVPGEQHCES SKQSTSQSGS 300 PECPFQLGGG ASGGTSMTGG DSIEDEEDEK SESHSWRSHA LTSKTNNVXQ MFLPRPDLRI

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

XEMRKIEALL LSDAILALKE ESDRYRKSNA EPVLEEFIPL KKSSDEDETD KGEIRKEDCK  60
DKMNWMSSVQ LWNSDHQSTK LDDNSSKQIP KPDSKKRLSE EENHGTSEDF FKSRKSHSTV  120
KAFAPFKGCS GLPLILPGKE DNEELPGVPG LSLKNLGIKK PREDFSCVGF SSTAGGSRAV  180
SSITSVQSNV RALSHSQSQT ARKQRRCWSP ELHRRFVDAL QKLGGCQAAT PKQIRELMQV  240
DGLTNDEVKS HLQKYRLHTR RLPTTRSSTA NQSVVVLGGL WVPGEQHCES SKQSTSQSGS  300
PECPFQLGGG ASGGTSMTGG DSIEDEEDEK SESHSWRSHA LTSKTNNVXQ MFLPRPDLRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112425.1	1e-137	transcription factor HHO2-like
TrEMBL	A0A068TME1	1e-131	A0A068TME1_COFCA; Uncharacterized protein
STRING	XP_009774094.1	1e-113	(Nicotiana sylvestris)