PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5882_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 582aa    MW: 65977.8 Da    PI: 5.8807
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5882_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24200253155
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          k+r++Wt +LH++Fv+av+q+ G ek  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  cra_locus_5882_iso_1_len_2395_ver_3 200 KTRVVWTVDLHQKFVKAVNQI-GFEKVGPKKILDLMGVPWLTRENVASHLQKYRL 253
                                          68*******************.9*******************************8 PP
2Response_reg82.41.5e-27201281109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +l
  cra_locus_5882_iso_1_len_2395_ver_3  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DL 91 
                                          89*********************.***************999999**********************6644.8* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  cra_locus_5882_iso_1_len_2395_ver_3  92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
                                          **********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-3617151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.3E-4517148No hitNo description
SMARTSM004481.3E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.77319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-3021134No hitNo description
SuperFamilySSF466892.33E-17198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-27199258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-21200253IPR006447Myb domain, plants
PfamPF002496.8E-8202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MEVSGYPSPR TDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA REALDLLRER  60
KDGFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VKEIENHEGF EEIQFMRNVC DQSEDRMFSS ANDLASGKKR  180
KDYENKHDDR ECSDSSSVKK TRVVWTVDLH QKFVKAVNQI GFEKVGPKKI LDLMGVPWLT  240
RENVASHLQK YRLYLTRLQK EKELTASFGV MKHSDISSKE QTGNHCLQNS VNMQQTNGSC  300
GISGNKTAMQ NIDFEIHEGD LKSLVKIPMV DANNGLGGDN PDSQRGRRMN ADHSFRKLDS  360
DVKYATTIPE QYMWSAEGSE VQANQERKQP FRPKPGFNPM PLPSLHQNIQ FDCVRPTPSF  420
VSKPSNIHND KLGGSEKKTI FVKSVSHGNM VDLLPVQPQS ELTATTSQEV LKPDPSSIVW  480
STKNQRAADQ IFVSDMESAQ RSIDLVGGWG LATWEENQQG CLIEADIHRL TQGLQNIESF  540
SYNEAGIISE ASSYLYDSLK FDYEMPLEPM EYSVIDQGLF IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17196258163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100212.10.0two-component response regulator ORR26 isoform X1
RefseqXP_027152868.10.0two-component response regulator ORR26
TrEMBLA0A2R6RED20.0A0A2R6RED2_ACTCH; Two-component response regulator like
STRINGVIT_01s0010g02230.t010.0(Vitis vinifera)