PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5843_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 614aa MW: 67702 Da PI: 8.5443 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + cra_locus_5843_iso_2_len_2444_ver_3 402 FEHflHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 439 554459******************************88 PP | |||||||
2 | BELL | 99.5 | 2.7e-32 | 264 | 333 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++kkk++L+s+l+eV+krYkqy++q+q+v++sFeavag+ +a+p+++lAlka+S+hF+ Lk+ i++q+ cra_locus_5843_iso_2_len_2444_ver_3 264 SENRKKKSRLMSMLHEVCKRYKQYYQQMQAVVASFEAVAGVRNAAPFANLALKAMSKHFKYLKNTITDQL 333 689****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.4E-48 | 196 | 331 | IPR006563 | POX domain |
Pfam | PF07526 | 2.9E-36 | 201 | 330 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 380 | 443 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.27E-12 | 383 | 444 | No hit | No description |
SMART | SM00389 | 3.1E-10 | 383 | 447 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 385 | 450 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 386 | 447 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.6E-19 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MAEGFEPYHV PQQSRRDKLR ILSGHQNQQP SAAAGVGQGL LPLIYDIPST ACGVKVENAN 60 LMAQIMAASS SSSNNHLYID PPQLNPSSIE GFLNYNNTPH PPQGGLRFLH DQSFPLSVVT 120 HESNNNNNNS NRSGSGQALS LSLSSNNNHP TLPPQLDLNL QRYDINNSSI FTTPSKVITT 180 GDVSGSRNSV PLGPFTGYAS VLKGSRFLKP AQLLLEELCE VGRGISSFEK IEAADHYLFM 240 DSPLESLCGT GIEDDPQTCT GNGSENRKKK SRLMSMLHEV CKRYKQYYQQ MQAVVASFEA 300 VAGVRNAAPF ANLALKAMSK HFKYLKNTIT DQLQFITEPR STQIAREKDS TTLCFDNPLM 360 GIQNERQLQN VGLVHDHHHQ PVWRPQRGLP ERAVTVLRAW LFEHFLHPYP TDTDKIMLAK 420 QTGLSRNQVS NWFINARVRL WKPMVEEIHM LETRQAQKAS HKEDKNADQR QNNAMASTNR 480 VSCEKKITSS QKVEDFPSKR TRSDLTAIQT RNEGDMNLLP YDNSSRHPCL NVGHVSTGAG 540 AGAGAGGTGG VSLTLGLHQN NNGIGLGDTF PINAARRFGL DSNNDGYVIG GIDARNRQFG 600 REIIGGQLLH DFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654234.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-113 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A5AHA1 | 0.0 | A5AHA1_VITVI; Uncharacterized protein | ||||
TrEMBL | F6HL25 | 0.0 | F6HL25_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g01290.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3520 | 22 | 37 |