PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5843_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TALE
Protein Properties Length: 612aa    MW: 67573.8 Da    PI: 8.5443
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5843_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-094024391954
                                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                          Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  cra_locus_5843_iso_1_len_2419_ver_3 402 FEHflHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 439
                                          554459******************************88 PP
2BELL99.52.7e-32264333372
                                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                           e++kkk++L+s+l+eV+krYkqy++q+q+v++sFeavag+ +a+p+++lAlka+S+hF+ Lk+ i++q+
  cra_locus_5843_iso_1_len_2419_ver_3 264 SENRKKKSRLMSMLHEVCKRYKQYYQQMQAVVASFEAVAGVRNAAPFANLALKAMSKHFKYLKNTITDQL 333
                                          689****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.4E-48196331IPR006563POX domain
PfamPF075262.9E-36201330IPR006563POX domain
PROSITE profilePS5007112.098380443IPR001356Homeobox domain
CDDcd000862.26E-12383444No hitNo description
SMARTSM003893.1E-10383447IPR001356Homeobox domain
SuperFamilySSF466894.71E-17385450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-28386447IPR009057Homeodomain-like
PfamPF059206.5E-19400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR ILSGHQNQQP SAAAGVGQGL LPLIYDIPST ACGVKVENAN  60
LMAQIMAASS SSSNNHLYID PPQLNPSSIE GFLNYNNTPH PPQGGLRFLH DQSFPLSVVT  120
HESNNNNNNS NRSGSGQALS LSLSSNNNHP TLPPQLDLNL QRYDINNSSI FTTPSKVITT  180
GDVSGSRNSV PLGPFTGYAS VLKGSRFLKP AQLLLEELCE VGRGISSFEK IEAADHYLFM  240
DSPLESLCGT GIEDDPQTCT GNGSENRKKK SRLMSMLHEV CKRYKQYYQQ MQAVVASFEA  300
VAGVRNAAPF ANLALKAMSK HFKYLKNTIT DQLQFITEPR STQIAREKDS TTLCFDNPLM  360
GIQNERQLQN VGLVHDHHHQ PVWRPQRGLP ERAVTVLRAW LFEHFLHPYP TDTDKIMLAK  420
QTGLSRNQVS NWFINARVRL WKPMVEEIHM LETRQAQKAS HKEDKNADQR QNNAMASTNR  480
VSCEKKITSS QKVEDFPSKR TRSDLTAIQT RNEGDMNLLP YDNSSRHPCL NVGHVSTGAG  540
AGAGGTGGVS LTLGLHQNNN GIGLGDTFPI NAARRFGLDS NNDGYVIGGI DARNRQFGRE  600
IIGGQLLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15389446158Homeobox protein Meis1
4xrs_B1e-15389446158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654234.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-114BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA5AHA10.0A5AHA1_VITVI; Uncharacterized protein
TrEMBLF6HL250.0F6HL25_VITVI; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]