PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5798_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 298aa    MW: 33087 Da    PI: 5.1361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5798_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.5e-21126176155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++++GVr+++ +grW+AeIrdp   g rkr++lg+++t+eeAa  +++a+ kl+g
  cra_locus_5798_iso_1_len_1893_ver_3 126 KKFRGVRQRP-WGRWAAEIRDP---GLRKRVWLGTYDTPEEAASVYDRAAVKLKG 176
                                          59********.**********9...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.3E-6521298IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.61E-34126184No hitNo description
SMARTSM003803.1E-38127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-30127185IPR001471AP2/ERF domain
PfamPF008473.6E-13127176IPR001471AP2/ERF domain
PROSITE profilePS5103223.775127184IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21127185IPR016177DNA-binding domain
PRINTSPR003671.1E-9128139IPR001471AP2/ERF domain
PRINTSPR003671.1E-9150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAINTTNNNL KILPSTSPMA SSSTSVKFAD HIFAPNKPVQ DRGSLSAGQK IVRIILTDAD  60
ATDSSDDDED ERTVRRRVKR HVVEINVGHG GVPTKSVKQE QKPTINKKRI LPCLMSQPES  120
DVIKRKKFRG VRQRPWGRWA AEIRDPGLRK RVWLGTYDTP EEAASVYDRA AVKLKGPDAV  180
TNFPKESIME EMEKTTQSEK STETVSSALS PTSVLRYDDV SSQSQSDVGL LSPTSVLLHH  240
EVEFDSSLAF GGGDVDMDDA FGFDLDFPLS LPEMGLSGNH RTEEFGEFDF DDFLVDVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20124184263ATERF1
3gcc_A8e-20124184263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106126KKRILPCLMSQPESDVIKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027161425.11e-87pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A068U7799e-87A0A068U779_COFCA; Uncharacterized protein
STRINGXP_009592172.11e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137