PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5787_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 289aa    MW: 31279 Da    PI: 6.1775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5787_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13225270655
                                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  cra_locus_5787_iso_1_len_2721_ver_3 225 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 270
                                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16222283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11223274No hitNo description
Gene3DG3DSA:4.10.280.108.2E-17224284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
KGNEENQEEK HQEKHLKREP TRKEEEKLRQ MQAGGGGGNG LSKGGGLARF RSAPATWLEA  60
LLEDEETDVV LDPPVLATSN KPPLHPPVGA SSQPQSTEVS SAGGRYAADL GLLDSVGSGA  120
GGLSGLLRQN SSPAEFLSDG YFSSFGIPTN YDYLMSSSPL DVSESPSKRP READSNAAKA  180
SLAVVKGEQG GGISGLLDAE MDKLAEDSVL CRVRAKRGCA THPRSIAERV RRTRISDRIR  240
KLQELVPNMD KQTNTADMLE EAVEYVKFLQ KQIQELTEQQ KKCKCSAKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150216.11e-110transcription factor bHLH81
RefseqXP_027157260.11e-110transcription factor bHLH81-like
SwissprotQ9C8P82e-78BH080_ARATH; Transcription factor bHLH80
TrEMBLC7SBB70.0C7SBB7_CATRO; BHLH transcription factor MYC4
STRINGSolyc06g065040.2.11e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923