PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_57500_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 190aa MW: 20825.8 Da PI: 7.6046 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 52 | 107 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ cra_locus_57500_iso_1_len_599_ver_3 52 KQRRCWSPELHRRFVNALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 107 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.084 | 49 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-19 | 49 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-30 | 50 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-28 | 52 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-8 | 54 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
DELPIVPGFS LCTPEINVSR EDINYNGFSS KSSTSRSGSS SATNGQSQTA RKQRRCWSPE 60 LHRRFVNALQ QLGGAQVATP KQIRELMQVD GLTNDEVKSH LQKYRLHTRK ASASTMNTST 120 VQHLGLWVSQ EQCGESSKPS NSQSGSPQGP LHLARSSRGT SMMTGGDSME DEDDEKTESH 180 SWKSDIQLSG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-14 | 52 | 105 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-14 | 52 | 105 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-14 | 52 | 105 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-14 | 52 | 105 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092742.1 | 7e-80 | myb family transcription factor EFM | ||||
Swissprot | Q9FX84 | 1e-41 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A067L2E9 | 4e-68 | A0A067L2E9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_009052m | 5e-67 | (Manihot esculenta) | ||||
STRING | XP_002521841.1 | 6e-67 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4361 | 24 | 43 |
Publications ? help Back to Top | |||
---|---|---|---|
|