PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_57470_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15102.6 Da PI: 5.1871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.2 | 3.6e-07 | 1 | 23 | 33 | 55 |
AP2 33 lgkfgtaeeAakaaiaarkkleg 55 lg+f taeeAa+a+++a+ l+g cra_locus_57470_iso_1_len_404_ver_3 1 LGTFETAEEAARAYDEAACLLRG 23 79****************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-15 | 1 | 30 | No hit | No description |
PROSITE profile | PS51032 | 10.705 | 1 | 31 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-8 | 1 | 32 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-4 | 1 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 1 | 31 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
LGTFETAEEA ARAYDEAACL LRGSNTRTNF VTDYVSPDSP LASRIRNLLN NRKQKTNPKT 60 KTPNNTPTSS SSSSSSSLHS VSPSCQKIQE NNLLDFDDAY KPDMISNLCD EFDIDMRGRW 120 GLEQAFDHRF PFSTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027072587.1 | 7e-34 | ethylene-responsive transcription factor ERN1-like | ||||
Swissprot | A0A1X9PY88 | 1e-27 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A068V347 | 1e-33 | A0A068V347_COFCA; Uncharacterized protein | ||||
STRING | XP_010097403.1 | 2e-29 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Publications ? help Back to Top | |||
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