PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_57470_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 135aa    MW: 15102.6 Da    PI: 5.1871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_57470_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.6e-071233355
                                  AP2 33 lgkfgtaeeAakaaiaarkkleg 55
                                         lg+f taeeAa+a+++a+  l+g
  cra_locus_57470_iso_1_len_404_ver_3  1 LGTFETAEEAARAYDEAACLLRG 23
                                         79****************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-15130No hitNo description
PROSITE profilePS5103210.705131IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-8132IPR016177DNA-binding domain
SMARTSM003805.9E-4139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
LGTFETAEEA ARAYDEAACL LRGSNTRTNF VTDYVSPDSP LASRIRNLLN NRKQKTNPKT  60
KTPNNTPTSS SSSSSSSLHS VSPSCQKIQE NNLLDFDDAY KPDMISNLCD EFDIDMRGRW  120
GLEQAFDHRF PFSTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072587.17e-34ethylene-responsive transcription factor ERN1-like
SwissprotA0A1X9PY881e-27ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A068V3471e-33A0A068V347_COFCA; Uncharacterized protein
STRINGXP_010097403.12e-29(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]