PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5740_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 437aa    MW: 47918.4 Da    PI: 7.5835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5740_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-08113134426
                                          ---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                          + C+++++ G C +G++C++ H+
  cra_locus_5740_iso_5_len_2114_ver_3 113 KVCNYWLQ-GNCTFGEKCRYLHS 134
                                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.152651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.1922652IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7109134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309109136IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6111135IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6113134IPR000571Zinc finger, CCCH-type
SMARTSM003202.7E-4140177IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.3E-42142425IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.65E-42143426IPR017986WD40-repeat-containing domain
PfamPF004002.1E-4144177IPR001680WD40 repeat
PROSITE profilePS5029419.301147347IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.881147186IPR001680WD40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003204.0E-6164178IPR020472G-protein beta WD-40 repeat
SMARTSM0032049217254IPR001680WD40 repeat
SMARTSM003200.0075261298IPR001680WD40 repeat
PfamPF004000.03265298IPR001680WD40 repeat
PROSITE profilePS5008211.745268307IPR001680WD40 repeat
PRINTSPR003204.0E-6285299IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9E-4301338IPR001680WD40 repeat
PfamPF004000.0031303337IPR001680WD40 repeat
PRINTSPR003204.0E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM0032018342385IPR001680WD40 repeat
SMARTSM003209.2388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDVDGGKGVF HRLGPAAATA SSSNTDRQQK VCYHWRAGKC NRHPCPFLHR ELPPPPPHSM  60
GNGMASSKRP HGFAADDQYG GGMRRNPNFN NTWGRQRQEQ GYVNRGIVKK TEKVCNYWLQ  120
GNCTFGEKCR YLHSWFTGDC FSMLSQLEGH QKVVTGIALG SDKLYTGSKD DTVRIWDCQS  180
GQCAGLINLG AEIGCLLSEG PWVFVGLTNL VKAWNTQTST DLSLNGPVGQ VYALVVGNDM  240
LFAGVQDGNI LAWKFNVATN CFEPAASLKG HTLAVVTLVV GANRLYSGSM DHSIRVWSLE  300
NLQCLQTLTD HTDVVMSVLC WEQFLLSCSL DKTVKVWAAT ESGNLEVTYT HSEDHGLLTL  360
CGMHDAAAKP VLFCSCNDNC IRVYDLPSFS ERGKIFSKQE VRSMQPGPGG LFFTGDGTGL  420
VKVWQWLAEP AAARPPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-201444248323Tako8
6g6n_A5e-201444248323Tako8
6g6n_B5e-201444248323Tako8
6g6n_C5e-201444248323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110404.10.0zinc finger CCCH domain-containing protein 48-like
RefseqXP_027161267.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A2R6RSV90.0A0A2R6RSV9_ACTCH; Zinc finger CCCH domain-containing protein
TrEMBLX5I1990.0X5I199_IPONI; Zinc finger CCCH domain-containing protein
STRINGXP_004308123.10.0(Fragaria vesca)