PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5740_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 161aa MW: 18226.7 Da PI: 9.9402 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 8e-09 | 113 | 134 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++++ G C +G++C++ H+ cra_locus_5740_iso_3_len_962_ver_3 113 KVCNYWLQ-GNCTFGEKCRYLHS 134 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.192 | 26 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 26 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.309 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 111 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-7 | 113 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MDVDGGKGVF HRLGPAAATA SSSNTDRQQK VCYHWRAGKC NRHPCPFLHR ELPPPPPHSM 60 GNGMASSKRP HGFAADDQYG GGMRRNPNFN NTWGRQRQEQ GYVNRGIVKK TEKVCNYWLQ 120 GNCTFGEKCR YLHSWFTGDC FSMLSQLEGH QKVSIILFIL K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110404.1 | 3e-71 | zinc finger CCCH domain-containing protein 48-like | ||||
Refseq | XP_027161267.1 | 3e-71 | zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 2e-39 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A3Q7G475 | 6e-67 | A0A3Q7G475_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g026350.2.1 | 1e-67 | (Solanum lycopersicum) |