PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_57229_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 128aa MW: 14651.8 Da PI: 10.5495 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.3 | 4.6e-20 | 24 | 86 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++ ++++++L++eN +L+ el++l+ e ++l +++ cra_locus_57229_iso_1_len_509_ver_3 24 ERELKRQRRKQSNRESARRSRLRKQAECDDMAQRAEVLKEENASLRAELSRLRSEHDQLAAQN 86 89********************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-18 | 17 | 85 | No hit | No description |
Pfam | PF00170 | 1.6E-18 | 24 | 86 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.3E-20 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.967 | 26 | 89 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.25E-11 | 27 | 83 | No hit | No description |
CDD | cd14702 | 1.09E-13 | 29 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
XVAGGLVTAR SRDSVQSQMW IQDERELKRQ RRKQSNRESA RRSRLRKQAE CDDMAQRAEV 60 LKEENASLRA ELSRLRSEHD QLAAQNASLR ERLGEVPGRD DPRPSRNDIS LNKDTQHSSQ 120 TEPTQGGQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | RRSRLRK |
2 | 40 | 47 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508279.1 | 4e-77 | PREDICTED: bZIP transcription factor 16-like | ||||
Refseq | XP_016508280.1 | 4e-77 | PREDICTED: bZIP transcription factor 16-like | ||||
Swissprot | Q501B2 | 5e-35 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A2G2XM92 | 4e-77 | A0A2G2XM92_CAPBA; Uncharacterized protein | ||||
STRING | Solyc08g076100.2.1 | 3e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3065 | 24 | 46 |
Publications ? help Back to Top | |||
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