PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5720_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 316aa MW: 34853.5 Da PI: 7.6772

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5720_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.8e-11	178	223	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ cra_locus_5720_iso_1_len_1103_ver_3 178 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 223 899**********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-14	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.68	176	228	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-10	178	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	178	232	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.6E-14	178	229	No hit	No description
CDD	cd14703	4.44E-22	179	229	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MAQLPPKVPT MTQNWPSFPF QMMPFPSSST AAAAAAASSQ QNSSWVDEFL DFSSARRNSH 60 RRSVSDPIAF VEAPNNNGFE KLDDEQLRTM FSDDVAAMGL PTMSSSNPSS TNPSTPSDQN 120 SENDEKNAPP PLPLENQNLQ PKIEPGEVDS SCKIQIQSQP STNSSANNAS PDAIVDPKRI 180 KRILANRQSA QRSRVRKLQY ISELERSVTT LQTEVSALSP RVAFLDHQRL ILNVDNSALK 240 QRIAALAQDK IFKDAHQEAL RKEIERLRQI YHEQNMKKMS NKGTNEASQS PTAAAAAPAP 300 PPLLSNFNNN NNNNNX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062040.1	1e-131	basic leucine zipper 61-like
Refseq	XP_027171406.1	1e-131	basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-109	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A2G9HTN5	1e-126	A0A2G9HTN5_9LAMI; Uncharacterized protein
STRING	XP_009627193.1	1e-122	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]