PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_56691_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 100aa MW: 10274.2 Da PI: 8.3667 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41 | 3.2e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA++VRC++C+tV cra_locus_56691_iso_1_len_299_ver_3 28 CGGCRTLLMHARGATNVRCSCCHTV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 49.5 | 6.8e-16 | 73 | 97 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GA sV+Ca+C+++ cra_locus_56691_iso_1_len_299_ver_3 73 CGNCRTILMYPAGAASVKCAICHFI 97 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 5.9E-5 | 4 | 95 | No hit | No description |
SuperFamily | SSF48695 | 3.63E-5 | 4 | 95 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 1.7E-16 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-12 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-14 | 70 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-14 | 73 | 97 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
GAANVRCTIC NVITAVPPAG MEMAQLICGG CRTLLMHARG ATNVRCSCCH TVNLVPAPPA 60 PAPAPNNVSH VNCGNCRTIL MYPAGAASVK CAICHFITNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096731.1 | 6e-50 | protein LSD1 | ||||
Swissprot | Q93ZB1 | 5e-37 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G9I4Y5 | 2e-48 | A0A2G9I4Y5_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA05G30490.1 | 2e-44 | (Glycine max) | ||||
STRING | GLYMA08G13630.1 | 3e-44 | (Glycine max) | ||||
STRING | Migut.M01935.1.p | 2e-44 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Publications ? help Back to Top | |||
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