PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5660_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 332aa MW: 37025.3 Da PI: 6.967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5660_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.5e-10	54	103	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL l ++ +K++Ka+iL+ +++ +k+L cra_locus_5660_iso_3_len_1718_ver_3 54 RKVQKADREKLRRDRLNEQFAELGNTLDPD----RPKNDKASILTDTIQMLKDL 103 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.516	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-7	54	107	No hit	No description
SuperFamily	SSF47459	1.24E-12	54	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-12	54	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-7	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDDHHEPLFH QSIQRPNPPL AEFRQPQTDI RLPCNRPLPD SRPEAEPKDT IAARKVQKAD 60 REKLRRDRLN EQFAELGNTL DPDRPKNDKA SILTDTIQML KDLSAEVNRL KAEQAALTDE 120 SRELTQEKND LREEKASLKS DVESLNAQYQ QRMRAMYPWA PMDHSVVMHP PSYPFPMPMP 180 IPTGPIPMHP SMQPYPLFGN QNPAVVPSPV STFVPYVAPN SLVEQQSTQH AAPVIQPASR 240 SHASGKQEPR PRTSSSQRES NETSDDVATD LELKTPGSAS EQDASPRRRK VKKSPRKESS 300 ITEGSSSSRC SSSQSVQAIS SNSVVGGTKM DE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	289	PRRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027159462.1	1e-176	transcription factor bHLH121
Swissprot	Q9LT23	1e-89	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A068TNL1	1e-165	A0A068TNL1_COFCA; Uncharacterized protein
STRING	Solyc01g111130.2.1	1e-144	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]