PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_56185_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | DBB | ||||||||
Protein Properties | Length: 171aa MW: 18780.2 Da PI: 6.3293 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2.1e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC +C +e H H++ cra_locus_56185_iso_2_len_568_ver_3 4 QCDVCEKAPATVICCADEAALCSKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 26.7 | 1.1e-08 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++e + +fC +++ l+C+dC + +H+ H cra_locus_56185_iso_2_len_568_ver_3 53 NLPPCDICQERTAFIFCVEDRALFCKDCDEPIHSAnsiaanH 94 7799******99*********************655566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.314 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.23E-5 | 3 | 44 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.8E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.55E-7 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKIQCDVCEK APATVICCAD EAALCSKCDV EVHAANKLAS KHQRLLLQNN SNNLPPCDIC 60 QERTAFIFCV EDRALFCKDC DEPIHSANSI AANHQRFLAT GIRVALSSGC NKGEMKSNVE 120 PRPPKPNSQL NASKTPPQNV AGVPSHSWGV DDLFQFSDYD SSNKKEQLEF N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091647.1 | 2e-97 | B-box zinc finger protein 24 | ||||
Swissprot | Q9SID1 | 3e-69 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A2G9H329 | 2e-95 | A0A2G9H329_9LAMI; Uncharacterized protein | ||||
STRING | VIT_05s0102g00750.t01 | 5e-87 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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