PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5600_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27575.8 Da PI: 9.731 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.2 | 2.2e-21 | 31 | 113 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgekt 119 + + +fF+k +k+y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt cra_locus_5600_iso_2_len_962_ver_3 31 DGQIRHFFHKPSKAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKT 104 34455******************7443455555788************.**************66589******* PP NAM 120 dWvmheyrl 128 +Wvmh+y+l cra_locus_5600_iso_2_len_962_ver_3 105 NWVMHQYHL 113 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.577 | 1 | 132 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-24 | 30 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-7 | 35 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
SWVDCDMKYK LLMREGHAFP LIVXYAGVSK DGQIRHFFHK PSKAYTTGTR KRRKVHTDSE 60 IGGETRWHKT GKTRPVFVGG ILKGYKKILV LYTNYGRQRK PEKTNWVMHQ YHLGSDEEEK 120 DGELVVSKVF YQTQPRQCNT STTTTTNVLK QVDNQKILSR QDGGINVNNM VTKSINPPNF 180 MEYYGGSHDH DDEYLSYNVG ISQSRGETPP QPHQLIPNMV HVHATDDGSS FIQLPSTASK 240 AQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230485.1 | 1e-80 | PREDICTED: NAC domain-containing protein 73-like isoform X1 | ||||
Refseq | XP_019230486.1 | 1e-80 | PREDICTED: NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | O49459 | 8e-68 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A314KJF7 | 3e-79 | A0A314KJF7_NICAT; Nac domain-containing protein 73 | ||||
STRING | XP_009797428.1 | 6e-79 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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