PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_55883_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 126aa MW: 14173.3 Da PI: 10.2829

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_55883_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.3e-17	61	111	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdps k r++lg+++t +Aa+a++ a+ k++g cra_locus_55883_iso_1_len_376_ver_3 61 NYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTYDTDVDAARAYDFAAFKMRG 111 59*****.******854..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.42E-23	61	120	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.698	61	119	IPR001471	AP2/ERF domain
Pfam	PF00847	6.3E-13	61	111	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-31	61	120	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-36	61	125	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-13	62	73	IPR001471	AP2/ERF domain
CDD	cd00018	2.42E-27	62	119	No hit	No description
PRINTS	PR00367	2.8E-13	101	121	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
NYEPNSPISR YFDIHADFSE FKINSTPIYS PNSDSSGGSN STTISSDSTS SNNNENKKKK 60 NYRGVRRRPW GKFAAEIRDP SRKGSRIWLG TYDTDVDAAR AYDFAAFKMR GRKAILNFPL 120 DAGKSX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-28	58	120	2	64	ATERF1
3gcc_A	1e-28	58	120	2	64	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006365343.1	5e-60	PREDICTED: ethylene-responsive transcription factor ERF106-like
Swissprot	Q9LY05	6e-37	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	K4L9E9	6e-59	K4L9E9_SOLTU; AP2 c3 (Fragment)
TrEMBL	M1BB76	1e-58	M1BB76_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400041328	2e-59	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]