PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5583_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 230aa    MW: 26280.1 Da    PI: 9.898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5583_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-16132221198
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                          f+k +++s+v+   +l lp +f +++  +k ++ t++l de+  ++  k+   k++    l++GW++F+ ++gL
  cra_locus_5583_iso_6_len_1587_ver_3 132 FVKPMLQSHVTGGFWLGLPVQFSKTNL-PK-RDETVVLVDEEEDEFPTKYLAMKTG----LSGGWRGFALEHGL 199
                                          89********************98884.43.5669***************555555....************** PP

                                          -TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                                           +gD +vF+l++ ++f  +v ++r
  cra_locus_5583_iso_6_len_1587_ver_3 200 VDGDALVFQLIQPTKF--KVYIIR 221
                                          ***********97777..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-23125223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20125222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-26130221No hitNo description
PfamPF023621.0E-14132221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153132223IPR003340B3 DNA binding domain
SMARTSM010191.3E-22132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVVSKKALAY EEKRLQILEQ NKKKLEELNL TKLAQALRTT NSPKPSPMKK VKPRTPRQPV  60
DPSTVRRSSR VADKPPPNYK DAPIEPLGRP RSYGYRRRDL SNRVYASDED RECAIERAEA  120
LQARLDQEFP SFVKPMLQSH VTGGFWLGLP VQFSKTNLPK RDETVVLVDE EEDEFPTKYL  180
AMKTGLSGGW RGFALEHGLV DGDALVFQLI QPTKFKVYII RVNEAEDDKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084372.11e-130B3 domain-containing protein At3g19184-like
SwissprotQ1G3M33e-84Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A1S4DHZ21e-121A0A1S4DHZ2_TOBAC; B3 domain-containing protein At3g19184-like
TrEMBLA0A1U7W5R21e-121A0A1U7W5R2_NICSY; B3 domain-containing protein At3g19184-like
STRINGXP_009772546.11e-122(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]