PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_55803_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 129aa MW: 14949.1 Da PI: 9.9316

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_55803_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	47	92	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +Av+YIk+Lq cra_locus_55803_iso_1_len_388_ver_3 47 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 92 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-17	44	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.55E-10	45	96	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-16	46	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-10	47	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-13	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
TSGLTHHLSL PKTSTEMAAI EKYLQFQQDS VPCKIRAKRG CATHPRSIAE RMRRTRISER 60 MKKLQDLFPN MDKQTNTADM LDLAVDYIKD LQEQVQTLTD KKAKARVQVS SCNIQMEQHE 120 FGRSEERRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229606.1	6e-69	transcription factor bHLH130
Swissprot	Q66GR3	7e-50	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A3Q7EIP2	1e-67	A0A3Q7EIP2_SOLLC; Uncharacterized protein
STRING	Solyc01g086870.2.1	2e-68	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]