PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_555_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 341aa    MW: 37467 Da    PI: 4.7835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_555_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-141862271255
                                 AP2  12 rgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +l+g
  cra_locus_555_iso_5_len_1625_ver_3 186 GGKFAAEIRDP---NkKGSRVWLGTFDTAVEAAKAYDRAAFRLRG 227
                                         589*******9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-26176236IPR001471AP2/ERF domain
SMARTSM003802.2E-30177241IPR001471AP2/ERF domain
CDDcd000181.96E-26177236No hitNo description
PROSITE profilePS5103220.903177235IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-18177237IPR016177DNA-binding domain
PRINTSPR003675.7E-8178189IPR001471AP2/ERF domain
PfamPF008473.1E-8186227IPR001471AP2/ERF domain
PRINTSPR003675.7E-8217237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGSTTDEAST LEMITQLLLL DDFAFMEGYS VSNSSSSTSS SSTNDQSQTT TSSNSESISE  60
SDFNSSSITE TSTFMAPTSF SFTCTNSNSA PESEYPQFFN PYPAINTGFN YFSQSQTNPQ  120
KISSSQSSKS PKFNERKPSL NIVPPPRKVL EFGKFNNNNF ESTAVEKKNP DSEERRHYRG  180
SDKGHGGKFA AEIRDPNKKG SRVWLGTFDT AVEAAKAYDR AAFRLRGSKA ILNFPHEVGN  240
NSLPENELAA ANSSRKRARE VPAEMEESVV TKEVKREEEE SPLSETNKPV ENKFTADGPL  300
TPSSWTSVWD CGDGKGSIYE LPLLSPLSPF SRMGSSELMV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-24176238163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027165068.11e-73ethylene-responsive transcription factor 5-like
TrEMBLA0A068UAZ92e-69A0A068UAZ9_COFCA; Uncharacterized protein