PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5497_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 560aa    MW: 60604.8 Da    PI: 8.9237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5497_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31255311259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          dDgynWrKYGqK vk +e+prsYY+Ct+ +Cpvkkkver++ d++v eitY+g+Hnhe
  cra_locus_5497_iso_3_len_2319_ver_3 255 DDGYNWRKYGQKLVKAKEHPRSYYKCTHLNCPVKKKVERAT-DGHVAEITYKGQHNHE 311
                                          8***************************************9.***************8 PP
2WRKY104.36.4e-33433491159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver+++d k+v++tYeg+Hnh+
  cra_locus_5497_iso_3_len_2319_ver_3 433 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYAGCNVRKHVERASTDAKAVVTTYEGKHNHD 491
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-29243313IPR003657WRKY domain
PROSITE profilePS5081124.168249313IPR003657WRKY domain
SuperFamilySSF1182901.31E-25252313IPR003657WRKY domain
SMARTSM007741.4E-34254312IPR003657WRKY domain
PfamPF031063.6E-24255311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-36419493IPR003657WRKY domain
SuperFamilySSF1182903.92E-29425493IPR003657WRKY domain
PROSITE profilePS5081137.688428493IPR003657WRKY domain
SMARTSM007746.7E-39433492IPR003657WRKY domain
PfamPF031061.2E-25434491IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEVDGGGAA GGAQQPPRPT AISVPSRGSY EALFGGSSVP GGFSPGPMTL LAGMFSPDSN  60
SCSFSQLLAG AMASPISIPK PPPAPLLPES NYSTEIPPKE NNLMDGSDKG AGYKQNRPMG  120
LMVAHSPLFL VPPGLSPSGL LNSPAFLSPL QSPFGMSHQQ ALAHVTAQAA LSQSFRQMQA  180
DYPHSSAAET FQFQPSAMPP ETLQFQPSSV PPPPETVQQH MDNAPAEPQC LKMGSSEASQ  240
SDTKVAAVAL DKPADDGYNW RKYGQKLVKA KEHPRSYYKC THLNCPVKKK VERATDGHVA  300
EITYKGQHNH EMPQPTNFQA KDVSNAGVIN AGGKTELCSR SQTENDTLNV VKTSDSGARK  360
YKAPRQLPSD QFPVNDEHDE MEDSAIVIDG ENDDEPSAKR RSTEVGARLP APSTKTITEP  420
KIVVQTRSEV DLLDDGYKWR KYGQKVVKGN PHPRSYYRCT YAGCNVRKHV ERASTDAKAV  480
VTTYEGKHNH DIPIAARNNA RIFLTVAVCS XSQKGLQAGS LLHREEWVLK IKINYKFSHS  540
XKRGKLLHKV APLKSLGAQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37255493877Probable WRKY transcription factor 4
2lex_A6e-37255493877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153010.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-127WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A068U3T60.0A0A068U3T6_COFCA; Uncharacterized protein
STRINGXP_009768106.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]