PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5487_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 868aa MW: 98135.5 Da PI: 6.859

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5487_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.3	3.8e-16	55	126	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA++vGFs+r+ + ++s +g +t r+f Cs+ g +++ ++ C+a l+++++ +g cra_locus_5487_iso_7_len_3194_ver_3 55 SFYDEYARRVGFSTRVGHYSRS--SGMVTAREFLCSRDGLKRRAGDS--------------CDALLRIELRGHG 112 5**************99888..999*********9998877..............********* PP FAR1 75 kwevtkleleHnHe 88 kw+vt++++eH+H+ cra_locus_5487_iso_7_len_3194_ver_3 113 KWVVTRFVKEHSHS 126 ***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-12	55	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-24	266	357	IPR018289	MULE transposase domain
Pfam	PF04434	6.3E-11	540	578	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.214	544	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-8	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MDVEVIDSED GNMGQRGSIT DDGDDDPHEI GELNEDGLVE PHVGMEFDSE DSAKSFYDEY 60 ARRVGFSTRV GHYSRSSGMV TAREFLCSRD GLKRRAGDSC DALLRIELRG HGKWVVTRFV 120 KEHSHSTVNP GKVQSLRPRR HFAGAVKHNA ETYSGTGTVP SGVMYVSMDG NCIPADTNRR 180 AKSSSVEPNH TVRSLAPVSS CSSRQTGRKR TLGRDAQNLL DYFKKMQAEN PGFYYAIQLD 240 EDNHMANVFW ADARSRTAYS HFGDAVTLDT RYRVNQYKVP FTPFTGVNHH GQTILFACAL 300 LLDESEATFL WLFKTFLAAM NDRAPVSITT DKDKAIQMSA AQVFPEARHC INKWDVLREG 360 QERMAHVCHV HPSFQVELYN CINLTQTVEE FESSWDSIIN KYDLKRNDWL QSIYNIRRQW 420 IPVYFHDSFF AAISPNQGFE SSFFDGYVNQ QTTLPLFFRQ YERAIESSFE KEVEADSDTT 480 RTSPVLKTPS PMEKQAASFY TRRIFSKFQE ELVETFVYTA NRIDGDGVIS TFRVAKFEDD 540 QKAYIVSLNV ADMKASCSCQ MFEFSGILCR HVLTVFTVTN VLTLPSHYIL KRWTRHARTG 600 FGSEDCGEVH CHESLTTRYN SLCREAIRYA EEGAITPETY DIVLSALKEA GKKIAAVKKN 660 VAKAVPPSLH GVGYDDHRTL IYAPDTTPLL WPRQDEMIKR FNLNDVGAST QSGDMNLPRM 720 APTSVQRGDG ASDNMLILPC LKSMTWVMEN KNSTPANRVA VINLKLQDYS RNPSGESEVK 780 FHLSKVTLEP MLRSMAFISE QLSTPANRVA VINLKLQDTE ATSGESEVKF QVSRDTLGAM 840 LRSMAYIREQ LSIPVDPQQQ IHSKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MDVEVIDSED GNMGQRGSIT DDGDDDPHEI GELNEDGLVE PHVGMEFDSE DSAKSFYDEY  60
ARRVGFSTRV GHYSRSSGMV TAREFLCSRD GLKRRAGDSC DALLRIELRG HGKWVVTRFV  120
KEHSHSTVNP GKVQSLRPRR HFAGAVKHNA ETYSGTGTVP SGVMYVSMDG NCIPADTNRR  180
AKSSSVEPNH TVRSLAPVSS CSSRQTGRKR TLGRDAQNLL DYFKKMQAEN PGFYYAIQLD  240
EDNHMANVFW ADARSRTAYS HFGDAVTLDT RYRVNQYKVP FTPFTGVNHH GQTILFACAL  300
LLDESEATFL WLFKTFLAAM NDRAPVSITT DKDKAIQMSA AQVFPEARHC INKWDVLREG  360
QERMAHVCHV HPSFQVELYN CINLTQTVEE FESSWDSIIN KYDLKRNDWL QSIYNIRRQW  420
IPVYFHDSFF AAISPNQGFE SSFFDGYVNQ QTTLPLFFRQ YERAIESSFE KEVEADSDTT  480
RTSPVLKTPS PMEKQAASFY TRRIFSKFQE ELVETFVYTA NRIDGDGVIS TFRVAKFEDD  540
QKAYIVSLNV ADMKASCSCQ MFEFSGILCR HVLTVFTVTN VLTLPSHYIL KRWTRHARTG  600
FGSEDCGEVH CHESLTTRYN SLCREAIRYA EEGAITPETY DIVLSALKEA GKKIAAVKKN  660
VAKAVPPSLH GVGYDDHRTL IYAPDTTPLL WPRQDEMIKR FNLNDVGAST QSGDMNLPRM  720
APTSVQRGDG ASDNMLILPC LKSMTWVMEN KNSTPANRVA VINLKLQDYS RNPSGESEVK  780
FHLSKVTLEP MLRSMAFISE QLSTPANRVA VINLKLQDTE ATSGESEVKF QVSRDTLGAM  840
LRSMAYIREQ LSIPVDPQQQ IHSKKQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081555.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_027081562.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6P7X5	0.0	A0A2R6P7X5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOY34283	0.0	(Theobroma cacao)

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]