PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5487_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 868aa MW: 98135.5 Da PI: 6.859 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.3 | 3.8e-16 | 55 | 126 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA++vGFs+r+ + ++s +g +t r+f Cs+ g +++ ++ C+a l+++++ +g cra_locus_5487_iso_2_len_2972_ver_3 55 SFYDEYARRVGFSTRVGHYSRS--SGMVTAREFLCSRDGLKRRAGDS--------------CDALLRIELRGHG 112 5****************99888..999*************9998877..............************* PP FAR1 75 kwevtkleleHnHe 88 kw+vt++++eH+H+ cra_locus_5487_iso_2_len_2972_ver_3 113 KWVVTRFVKEHSHS 126 *************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-12 | 55 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-24 | 266 | 357 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 6.3E-11 | 540 | 578 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.214 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.4E-8 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MDVEVIDSED GNMGQRGSIT DDGDDDPHEI GELNEDGLVE PHVGMEFDSE DSAKSFYDEY 60 ARRVGFSTRV GHYSRSSGMV TAREFLCSRD GLKRRAGDSC DALLRIELRG HGKWVVTRFV 120 KEHSHSTVNP GKVQSLRPRR HFAGAVKHNA ETYSGTGTVP SGVMYVSMDG NCIPADTNRR 180 AKSSSVEPNH TVRSLAPVSS CSSRQTGRKR TLGRDAQNLL DYFKKMQAEN PGFYYAIQLD 240 EDNHMANVFW ADARSRTAYS HFGDAVTLDT RYRVNQYKVP FTPFTGVNHH GQTILFACAL 300 LLDESEATFL WLFKTFLAAM NDRAPVSITT DKDKAIQMSA AQVFPEARHC INKWDVLREG 360 QERMAHVCHV HPSFQVELYN CINLTQTVEE FESSWDSIIN KYDLKRNDWL QSIYNIRRQW 420 IPVYFHDSFF AAISPNQGFE SSFFDGYVNQ QTTLPLFFRQ YERAIESSFE KEVEADSDTT 480 RTSPVLKTPS PMEKQAASFY TRRIFSKFQE ELVETFVYTA NRIDGDGVIS TFRVAKFEDD 540 QKAYIVSLNV ADMKASCSCQ MFEFSGILCR HVLTVFTVTN VLTLPSHYIL KRWTRHARTG 600 FGSEDCGEVH CHESLTTRYN SLCREAIRYA EEGAITPETY DIVLSALKEA GKKIAAVKKN 660 VAKAVPPSLH GVGYDDHRTL IYAPDTTPLL WPRQDEMIKR FNLNDVGAST QSGDMNLPRM 720 APTSVQRGDG ASDNMLILPC LKSMTWVMEN KNSTPANRVA VINLKLQDYS RNPSGESEVK 780 FHLSKVTLEP MLRSMAFISE QLSTPANRVA VINLKLQDTE ATSGESEVKF QVSRDTLGAM 840 LRSMAYIREQ LSIPVDPQQQ IHSKKQRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081555.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_027081562.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2R6P7X5 | 0.0 | A0A2R6P7X5_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | EOY34283 | 0.0 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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