PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5400_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24489.5 Da PI: 6.8954 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.3 | 2e-06 | 32 | 81 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE++ Rd++N f eL + + +a + + Ka++L+ +++ +k+L cra_locus_5400_iso_5_len_1158_ver_3 32 RRIHKAEREKQKRDHMNVLFLELSKAIEPA----NMSNGKASVLKDTIRLLKEL 81 788999***********************9....89999*********999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.27E-5 | 29 | 85 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-11 | 29 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.407 | 31 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-8 | 31 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0092 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVSRNAISAS DDDGNVVSRL TSDTKKQGKV PRRIHKAERE KQKRDHMNVL FLELSKAIEP 60 ANMSNGKASV LKDTIRLLKE LLTQLDCLKK ENTTLLSESH YVNVEKDELY EENSVLKGQI 120 QKLRSDIEER YHSQASINLN SAQSEINPVA FQPPEDHFKL PSSDNASQAP SVVGPVFILP 180 VQHESQLVPQ SDIAASNVSK PQPRYPSASD SWPSHILDK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073951.1 | 6e-77 | transcription factor bHLH47-like isoform X2 | ||||
Refseq | XP_027073952.1 | 6e-77 | transcription factor bHLH47-like isoform X2 | ||||
Refseq | XP_027153377.1 | 6e-77 | transcription factor bHLH47-like | ||||
Refseq | XP_027153378.1 | 6e-77 | transcription factor bHLH47-like | ||||
TrEMBL | A0A068U3Q9 | 7e-77 | A0A068U3Q9_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0108g00480.t01 | 1e-66 | (Vitis vinifera) |