PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5400_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 265aa MW: 29756.2 Da PI: 7.6597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5400_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.4e-05	32	127	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................................ CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..........................................k 32 rr + erE++ Rd++N f eL + + ++ cra_locus_5400_iso_3_len_1295_ver_3 32 RRIHKAEREKQKRDHMNVLFLELSKAIGNLIllxglicmlcaqyvydtlhqfsgyytnxlfrvknslvsqkfaE 105 788999*********************99888999999999999999999999999999999999999999966 PP .TTS-STCHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksL 54 + + + Ka++L+ +++ +k+L cra_locus_5400_iso_3_len_1295_ver_3 106 PANMSNGKASVLKDTIRLLKEL 127 6666688999999998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-8	32	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-7	32	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-8	104	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-7	104	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MVSRNAISAS DDDGNVVSRL TSDTKKQGKV PRRIHKAERE KQKRDHMNVL FLELSKAIGN 60 LILLXGLICM LCAQYVYDTL HQFSGYYTNX LFRVKNSLVS QKFAEPANMS NGKASVLKDT 120 IRLLKELLTQ LDCLKKENTT LLSESHYVNV EKDELYEENS VLKGQIQKLR SDIEERYHSQ 180 ASINLNSAQS EINPVAFQPP EDHFKLPSSD NASQAPSVVG PVFILPVQHE SQLVPQSDIA 240 ASNVSKPQPR YPSASDSWPS HILDK