PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5400_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 290aa MW: 32539.4 Da PI: 7.996

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5400_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.2e-06	103	152	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE++ Rd++N f eL + + +a + + Ka++L+ +++ +k+L cra_locus_5400_iso_2_len_1210_ver_3 103 RRIHKAEREKQKRDHMNVLFLELSKAIEPA----NMSNGKASVLKDTIRLLKEL 152 788999*********************9....899999******999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-11	100	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-6	100	156	No hit	No description
PROSITE profile	PS50888	11.407	102	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	102	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0092	108	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
XLPHAFPWKR TSATISAVQY PVLSSXEEKP SCFQTASVLS PLIELNRKVL INCWKTGDYI 60 YLCVIAPYSQ RMVSRNAISA SDDDGNVVSR LTSDTKKQGK VPRRIHKAER EKQKRDHMNV 120 LFLELSKAIE PANMSNGKAS VLKDTIRLLK ELLTQLDCLK KENTTLLSES HYVNVEKDEL 180 YEENSVLKGQ IQKLRSDIEE RYHSQASINL NSAQSEINPV AFQPPEDHFK LPSSDNASQA 240 PSVVGPVFIL PVQHESQLVP QSDIAASNVS KPQPRYPSAS DSWPSHILDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073951.1	2e-75	transcription factor bHLH47-like isoform X2
Refseq	XP_027073952.1	2e-75	transcription factor bHLH47-like isoform X2
Refseq	XP_027153377.1	2e-75	transcription factor bHLH47-like
Refseq	XP_027153378.1	2e-75	transcription factor bHLH47-like
TrEMBL	A0A068U3Q9	2e-75	A0A068U3Q9_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00480.t01	3e-65	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34