PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5389_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 134aa MW: 14755 Da PI: 8.6287 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14 | 9.3e-05 | 39 | 71 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++ L++l+ + +K + a++L +A++YI+ L cra_locus_5389_iso_4_len_1316_ver_3 39 GERIAALQQLVSPY-----GKTDTASVLLEAMQYIRFL 71 57899999999999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-8 | 21 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.887 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-11 | 29 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.84E-5 | 33 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEHKRCPIAF EESNITTLTP KRHKADLSLT TKEKKEKVGE RIAALQQLVS PYGKTDTASV 60 LLEAMQYIRF LHEQVKVLSA PYLCSSPTTD TPDLEPYSLR SKGLCLVPVS CTVGVASSNG 120 ADIWAPMKTS SPKF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223604.1 | 7e-73 | transcription factor bHLH113 isoform X2 | ||||
Refseq | XP_007223605.1 | 9e-73 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_020420852.1 | 7e-73 | transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q7XJU2 | 1e-58 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2R6S0E0 | 4e-73 | A0A2R6S0E0_ACTCH; Transcription factor bHLH113 like | ||||
STRING | EMJ24804 | 3e-72 | (Prunus persica) |
Publications ? help Back to Top | |||
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