PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5375_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 143aa MW: 17007.2 Da PI: 7.2822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5375_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	104	127	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F+ +L +H + H cra_locus_5375_iso_5_len_632_ver_3 104 WRCGYCKKIFRAEKYLDQHFDNrH 127 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	106	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
XFILLLVVLS LPVSVYSISS LSQSNLQGTE HPNSRSLKQE DPHVHEVHCS RERSRAAWKV 60 IEEYLMPFVE KEKYQISPQC RLHPSNDLFR DQEEHKIHVD VNEWRCGYCK KIFRAEKYLD 120 QHFDNRHYNL LNAVGQLVLL FIW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123000.1	5e-69	uncharacterized protein LOC113739838
Refseq	XP_027168293.1	5e-69	uncharacterized protein LOC113768223
TrEMBL	A0A068V3A7	1e-67	A0A068V3A7_COFCA; Uncharacterized protein
STRING	POPTR_0015s10200.1	2e-60	(Populus trichocarpa)