PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_53553_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 116aa MW: 13670.9 Da PI: 8.2623 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.5 | 1.6e-14 | 26 | 77 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 ++++rr+ +NRe+ArrsR RK++ +eL+ L++eN L+++l++ ++ cra_locus_53553_iso_1_len_346_ver_3 26 DRKQRRMLSNRESARRSRMRKQKHFDELRSQLHCLKKENNNLINKLNHVSES 77 799****************************************999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-14 | 23 | 87 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.691 | 25 | 77 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.9E-12 | 26 | 84 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.48E-12 | 27 | 76 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-11 | 27 | 99 | No hit | No description |
CDD | cd14702 | 3.18E-14 | 28 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 30 | 45 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
XFSCVSNSST SDETDVSDHQ LTMIDDRKQR RMLSNRESAR RSRMRKQKHF DELRSQLHCL 60 KKENNNLINK LNHVSESHDK GLQENARLKE EASDLRRMVA DLQMNDSYSI FRGLDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 46 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077776.1 | 3e-46 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 6e-27 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A2G9I825 | 5e-46 | A0A2G9I825_9LAMI; Uncharacterized protein | ||||
STRING | XP_010694542.1 | 7e-44 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA947 | 24 | 92 |
Publications ? help Back to Top | |||
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