PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5337_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 739aa MW: 80582.9 Da PI: 5.0957 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.5 | 4e-07 | 480 | 509 | 25 | 54 |
--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRak 54 p+ +++ LA+++gLt +qV++WF N R + cra_locus_5337_iso_4_len_2919_ver_3 480 PKDSDKIMLARQTGLTRSQVSNWFINARVR 509 77888899********************88 PP | |||||||
2 | BELL | 118.3 | 3.6e-38 | 297 | 368 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kL +l+eV++rYkqy++q+q+v+ssF+ +ag g++kpYt+lAl++iSrhFrcL+dai+eq+ cra_locus_5337_iso_4_len_2919_ver_3 297 EKQDLQNKMTKLSAMLDEVERRYKQYYHQMQIVVSSFDGIAGPGASKPYTALALQTISRHFRCLRDAISEQV 368 6899******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-59 | 217 | 366 | IPR006563 | POX domain |
Pfam | PF07526 | 6.8E-49 | 223 | 365 | IPR006563 | POX domain |
SMART | SM00389 | 0.0064 | 463 | 517 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-10 | 479 | 520 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 479 | 519 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-11 | 480 | 509 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 4.19E-8 | 480 | 514 | No hit | No description |
PROSITE profile | PS50071 | 9.88 | 480 | 513 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MASFFPSPEN QRDASTILHL REPLPGSYSE GQVLPGNMMM YMNYASPSGE YSGTLPGNGG 60 QQQNSCIAIM PGASDSNPSQ QEILSDLGGS RVGEHDLNEW RDGRTSMLLM HPAEAAASVF 120 QCPQNLQGQG LSLTLSTHVP SGFRMPSFHC RTPDQGFSSF LSGTPSISNE DTGRNGTFGN 180 NNSSPNKQSR ISEFVPPGFL GSNSNPVRAD TSPYGVSGIA RAIPNSKYLK AAQQLLDEVV 240 NVKKALKEQS SKNKLVKDSK NADGGTKNGA LEPAGAGSSS NLEESSTNSP VELSAAEKQD 300 LQNKMTKLSA MLDEVERRYK QYYHQMQIVV SSFDGIAGPG ASKPYTALAL QTISRHFRCL 360 RDAISEQVQV TRKSLGDQDA SENSKGGRNF SPQICRPADQ TTESPSAAWY DATACLEATE 420 GTARDFCFNF AGLAFRTFSS SVNSFRNLIQ FTSLIFSWNL QFLGVFDTSK SILIFFPAXP 480 KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEIGDGEMDI NSPSELATKA 540 TNSEAKDSED RAAEDLQQST TSTPTERCST GQFFESRSDH FADVELMEPN IDQAYQNLNH 600 TETENEYGLG KSRSGSRRPE MNDCSFLPET TIVHQSNEGS HRLMAAAAAY HMSELERFEN 660 GNGGVSLTLG LQQCEGTNVA MSIGTHQGYV AMRGDTIYTT AAAASMVSEG TDQFDIMDTG 720 NHVSHQRFGS SHLLHDFVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027161849.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_027161850.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A068TL14 | 0.0 | A0A068TL14_COFCA; Uncharacterized protein | ||||
STRING | XP_008377277.1 | 0.0 | (Malus domestica) |