PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5337_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 702aa MW: 76969.3 Da PI: 5.8005 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3.1e-09 | 435 | 472 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + cra_locus_5337_iso_2_len_2801_ver_3 435 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 472 664459******************************88 PP | |||||||
2 | BELL | 118.4 | 3.4e-38 | 297 | 368 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kL +l+eV++rYkqy++q+q+v+ssF+ +ag g++kpYt+lAl++iSrhFrcL+dai+eq+ cra_locus_5337_iso_2_len_2801_ver_3 297 EKQDLQNKMTKLSAMLDEVERRYKQYYHQMQIVVSSFDGIAGPGASKPYTALALQTISRHFRCLRDAISEQV 368 6899******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-59 | 217 | 366 | IPR006563 | POX domain |
Pfam | PF07526 | 6.3E-49 | 223 | 365 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 413 | 476 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 416 | 480 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.14E-13 | 416 | 477 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-17 | 417 | 483 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 419 | 482 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.8E-18 | 433 | 472 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MASFFPSPEN QRDASTILHL REPLPGSYSE GQVLPGNMMM YMNYASPSGE YSGTLPGNGG 60 QQQNSCIAIM PGASDSNPSQ QEILSDLGGS RVGEHDLNEW RDGRTSMLLM HPAEAAASVF 120 QCPQNLQGQG LSLTLSTHVP SGFRMPSFHC RTPDQGFSSF LSGTPSISNE DTGRNGTFGN 180 NNSSPNKQSR ISEFVPPGFL GSNSNPVRAD TSPYGVSGIA RAIPNSKYLK AAQQLLDEVV 240 NVKKALKEQS SKNKLVKDSK NADGGTKNGA LEPAGAGSSS NLEESSTNSP VELSAAEKQD 300 LQNKMTKLSA MLDEVERRYK QYYHQMQIVV SSFDGIAGPG ASKPYTALAL QTISRHFRCL 360 RDAISEQVQV TRKSLGDQDA SENSKGVGIS RLRYVDQQIR QQRALQQLGM MQQHAWRPQR 420 GLPETSVSIL RAWLFEHFLH PYPKDSDKIM LARQTGLTRS QVSNWFINAR VRLWKPMVEE 480 MYKEEIGDGE MDINSPSELA TKATNSEAKD SEDRAAEDLQ QSTTSTPTER CSTGQFFESR 540 SDHFADVELM EPNIDQAYQN LNHTETENEY GLGKSRSGSR RPEMNDCSFL PETTIVHQSN 600 EGSHRLMAAA AAYHMSELER FENGNGGVSL TLGLQQCEGT NVAMSIGTHQ GYVAMRGDTI 660 YTTAAAASMV SEGTDQFDIM DTGNHVSHQR FGSSHLLHDF VA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 422 | 479 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 422 | 479 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892487.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A068TL14 | 0.0 | A0A068TL14_COFCA; Uncharacterized protein | ||||
STRING | EOX97922 | 0.0 | (Theobroma cacao) |