PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5316_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 788aa MW: 92389 Da PI: 7.8798

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5316_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.2	4.9e-12	154	230	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Y +YA++ GFs++k++ +k +g + + +t C + k++ ++ +r++C a+l ++++g cra_locus_5316_iso_6_len_3055_ver_3 154 YLAYARDRGFSITKKSASKG--TGCVrKYQTISCDRGRKSAAYVRT----------KRINCPARLSAILRENGM 215 99*********9998776..554404566778777766665555..........9************* PP FAR1 76 wevtkleleHnHela 90 w+v+k++++HnHel cra_locus_5316_iso_6_len_3055_ver_3 216 WQVSKIVENHNHELD 230 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-9	154	231	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-20	352	440	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	645	681	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-4	654	680	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
XKDHCCFELL LAVIVSGTKT RQTSCRKSQC PKRQNRRLET LTIDASLKQQ PPNVPLIVAS 60 RVVVLLELFD TEELIXFILR SLKICRKIQF VNFLKQNQIV NPEREMNRMN QPEESEEQIQ 120 ITDVEIQQVF HQEKAEEPRV GTFYNNIEEL FDSYLAYARD RGFSITKKSA SKGTGCVRKY 180 QTISCDRGRK SAAYVRTKRI NCPARLSAIL RENGMWQVSK IVENHNHELD PSMSRFMLAH 240 RSINLNMKRK LEAKNIAKTR PNKSVRPLEV QVGGPDKLDC LPRDCRNDVE SVRRLKISGG 300 DVDCINRMFL SMQQENSDFF HLIHADEEGR VDNVFWVHPR SRAAYEEFND AVSIDSTFLI 360 KDPFVSIIGV NHHGHPILLG SALISHEDTE TYKWVFRTWL AAMGGQPPIA VMTDQCESMR 420 SAIKEVMPNT IQSYYIFHIL CKFPEKFRGL REYTEVKNEF KAVVYDSLTK AMFETNWNQF 480 IAXIWVESNQ WLGKLYNERE LWVPVYVNHI FWAGMSTQRS ENIHGFFDGY IHSNSTLEQF 540 VEQYEIAIRH KVEKEDASDF KSKGSVVKCL TVYDWEIQFQ EAYTNEMFEK LQTEIRRMWY 600 CHLHVMGDKV GNELAEENFD EEGYEKFKIL EKVLLNAEYV KDFVYSVLYK EEGCFLKCNC 660 RSFESKGLLC AHILIVASMK DVRRFHERYL LRRWRKDVHR RYKRIFFDEG YPHMTIEFAK 720 FKELEKIFND VADIALSSHE KTLKFKQILE SSKDKLLNWN LVESITPNDS EVHVESMHRK 780 ERKGSIGS

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

XKDHCCFELL LAVIVSGTKT RQTSCRKSQC PKRQNRRLET LTIDASLKQQ PPNVPLIVAS  60
RVVVLLELFD TEELIXFILR SLKICRKIQF VNFLKQNQIV NPEREMNRMN QPEESEEQIQ  120
ITDVEIQQVF HQEKAEEPRV GTFYNNIEEL FDSYLAYARD RGFSITKKSA SKGTGCVRKY  180
QTISCDRGRK SAAYVRTKRI NCPARLSAIL RENGMWQVSK IVENHNHELD PSMSRFMLAH  240
RSINLNMKRK LEAKNIAKTR PNKSVRPLEV QVGGPDKLDC LPRDCRNDVE SVRRLKISGG  300
DVDCINRMFL SMQQENSDFF HLIHADEEGR VDNVFWVHPR SRAAYEEFND AVSIDSTFLI  360
KDPFVSIIGV NHHGHPILLG SALISHEDTE TYKWVFRTWL AAMGGQPPIA VMTDQCESMR  420
SAIKEVMPNT IQSYYIFHIL CKFPEKFRGL REYTEVKNEF KAVVYDSLTK AMFETNWNQF  480
IAXIWVESNQ WLGKLYNERE LWVPVYVNHI FWAGMSTQRS ENIHGFFDGY IHSNSTLEQF  540
VEQYEIAIRH KVEKEDASDF KSKGSVVKCL TVYDWEIQFQ EAYTNEMFEK LQTEIRRMWY  600
CHLHVMGDKV GNELAEENFD EEGYEKFKIL EKVLLNAEYV KDFVYSVLYK EEGCFLKCNC  660
RSFESKGLLC AHILIVASMK DVRRFHERYL LRRWRKDVHR RYKRIFFDEG YPHMTIEFAK  720
FKELEKIFND VADIALSSHE KTLKFKQILE SSKDKLLNWN LVESITPNDS EVHVESMHRK  780
ERKGSIGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	36	PKRQNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021688016.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like