PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5316_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 885aa MW: 103426 Da PI: 8.0833 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.9 | 5.7e-12 | 154 | 230 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Y +YA++ GFs++k++ +k +g + + +t C + k++ ++ +r++C a+l ++++g cra_locus_5316_iso_4_len_2651_ver_3 154 YLAYARDRGFSITKKSASKG--TGCVrKYQTISCDRGRKSAAYVRT----------KRINCPARLSAILRENGM 215 999**********9998776..554404566778777766665555..........9***************** PP FAR1 76 wevtkleleHnHela 90 w+v+k++++HnHel cra_locus_5316_iso_4_len_2651_ver_3 216 WQVSKIVENHNHELD 230 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-9 | 154 | 231 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-20 | 352 | 440 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.495 | 645 | 681 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.3E-4 | 654 | 680 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0011 | 656 | 683 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
XKDHCCFELL LAVIVSGTKT RQTSCRKSQC PKRQNRRLET LTIDASLKQQ PPNVPLIVAS 60 RVVVLLELFD TEELIXFILR SLKICRKIQF VNFLKQNQIV NPEREMNRMN QPEESEEQIQ 120 ITDVEIQQVF HQEKAEEPRV GTFYNNIEEL FDSYLAYARD RGFSITKKSA SKGTGCVRKY 180 QTISCDRGRK SAAYVRTKRI NCPARLSAIL RENGMWQVSK IVENHNHELD PSMSRFMLAH 240 RSINLNMKRK LEAKNIAKTR PNKSVRPLEV QVGGPDKLDC LPRDCRNDVE SVRRLKISGG 300 DVDCINRMFL SMQQENSDFF HLIHADEEGR VDNVFWVHPR SRAAYEEFND AVSIDSTFLI 360 KDPFVSIIGV NHHGHPILLG SALISHEDTE TYKWVFRTWL AAMGGQPPIA VMTDQCESMR 420 SAIKEVMPNT IQSYYIFHIL CKFPEKFRGL REYTEVKNEF KAVVYDSLTK AMFETNWNQF 480 IAXIWVESNQ WLGKLYNERE LWVPVYVNHI FWAGMSTQRS ENIHGFFDGY IHSNSTLEQF 540 VEQYEIAIRH KVEKEDASDF KSKGSVVKCL TVYDWEIQFQ EAYTNEMFEK LQTEIRRMWY 600 CHLHVMGDKV GNELAEENFD EEGYEKFKIL EKVLLNAEYV KDFVYSVLYK EEGCFLKCNC 660 RSFESKGLLC AHILIVASMK DVRRFHERYL LRRWRKDVHR RYKRIFFDEG YPHMTIEFAK 720 FKELEKIFND VADIALSSHE KTLKFKQILE SSKDKLLNWN LVESITPNDS EVHVESMHRK 780 ERKGSIGSXW GCPCGANTFI DIIEDMLPCV LLILGSNKLL ERVVGVESFM SSLNRRNMLR 840 LESSFRTRVT ARSLRPALPV KEVFRVKNDE SLYDKQIHFA SSVMX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | PKRQNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021688016.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |