PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_52887_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 102aa MW: 12047.5 Da PI: 10.5327 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.6 | 2.8e-20 | 6 | 99 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek. 72 fY++Y++ vGF+vr +k+ +++ r++vCs+eg+ +e++ ++++++++ +r+ C a ++++ ++ cra_locus_52887_iso_1_len_306_ver_3 6 FYEAYSRVVGFTVREXDKKRDLNTNVARYRKWVCSREGYCSERRPLnnsdRKHASKPKIISRIACPAGFRIRYDRk 81 9********************999999***********999887655555677788999**************998 PP FAR1 73 dgkwevtkleleHnHela 90 + k++v ++++eHnH+l+ cra_locus_52887_iso_1_len_306_ver_3 82 SRKYVVGSFVKEHNHDLV 99 9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-17 | 6 | 99 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
EEAGFFYEAY SRVVGFTVRE XDKKRDLNTN VARYRKWVCS REGYCSERRP LNNSDRKHAS 60 KPKIISRIAC PAGFRIRYDR KSRKYVVGSF VKEHNHDLVS PK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081720.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027081721.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027081722.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027081723.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027081724.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027183052.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027183053.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027183054.1 | 8e-28 | protein FAR1-RELATED SEQUENCE 5-like |