PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5114_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 248aa    MW: 27871.5 Da    PI: 7.6402
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5114_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18178212135
                                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  cra_locus_5114_iso_1_len_889_ver_3 178 CTHCESEKTPQWRTGPLGPKTLCNACGVRYKSGRL 212
                                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-792248IPR016679Transcription factor, GATA, plant
SMARTSM004017.4E-15172222IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451172208IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-14176236No hitNo description
Gene3DG3DSA:3.30.50.106.8E-14176210IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.22E-14177224No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003206.1E-16178212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDVYGLSTPD GFRIDDLLDF SNNDIFTSST TSTATATDSD AIHHHHFPNY SDKNNFAAGS  60
SAYFHTLNPD TYSATDFTDD IRVPNDDMKE LEWLSNFVHD SFTEFPSSSI TGTMNIRSET  120
PSNGRSRSKR FRSTVWTSES ATTNSDFSNS KKKLDQNSKS ITSRDRSASS SETVLRKCTH  180
CESEKTPQWR TGPLGPKTLC NACGVRYKSG RLVPEYRPAS SPTFVLTQHS NSHRKVLELR  240
RQKELLSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347916.13e-89PREDICTED: GATA transcription factor 4
SwissprotO497412e-72GATA2_ARATH; GATA transcription factor 2
TrEMBLM1CGF57e-88M1CGF5_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000669531e-88(Solanum tuberosum)
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]